Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSQ70_RS11295 Genome accession   NZ_CP151992
Coordinates   2216422..2216715 (-) Length   97 a.a.
NCBI ID   WP_024718841.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0397     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2211422..2221715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ70_RS11245 (NSQ70_11245) sinR 2211586..2211921 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  NSQ70_RS11250 (NSQ70_11250) - 2211989..2212789 (-) 801 WP_326111034.1 TasA family protein -
  NSQ70_RS11255 (NSQ70_11255) - 2212848..2213420 (-) 573 WP_017357979.1 signal peptidase I -
  NSQ70_RS11260 (NSQ70_11260) tapA 2213470..2213997 (-) 528 WP_326111031.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ70_RS11265 (NSQ70_11265) - 2214250..2214576 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  NSQ70_RS11270 (NSQ70_11270) - 2214611..2214805 (-) 195 WP_342502160.1 YqzE family protein -
  NSQ70_RS11275 (NSQ70_11275) comGG 2214866..2215249 (-) 384 WP_024718845.1 competence type IV pilus minor pilin ComGG -
  NSQ70_RS11280 (NSQ70_11280) comGF 2215246..2215743 (-) 498 WP_039166031.1 competence type IV pilus minor pilin ComGF -
  NSQ70_RS11285 (NSQ70_11285) comGE 2215685..2215999 (-) 315 WP_039166034.1 competence type IV pilus minor pilin ComGE -
  NSQ70_RS11290 (NSQ70_11290) comGD 2215983..2216429 (-) 447 WP_039166035.1 competence type IV pilus minor pilin ComGD -
  NSQ70_RS11295 (NSQ70_11295) comGC 2216422..2216715 (-) 294 WP_024718841.1 competence type IV pilus major pilin ComGC Machinery gene
  NSQ70_RS11300 (NSQ70_11300) comGB 2216732..2217772 (-) 1041 WP_041506954.1 competence type IV pilus assembly protein ComGB -
  NSQ70_RS11305 (NSQ70_11305) comGA 2217753..2218823 (-) 1071 WP_327871870.1 competence type IV pilus ATPase ComGA Machinery gene
  NSQ70_RS11310 (NSQ70_11310) - 2219282..2220154 (-) 873 WP_035390819.1 STAS domain-containing protein -
  NSQ70_RS11320 (NSQ70_11320) - 2220380..2220760 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NSQ70_RS11325 (NSQ70_11325) - 2220973..2221215 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10714.59 Da        Isoelectric Point: 6.7081

>NTDB_id=983928 NSQ70_RS11295 WP_024718841.1 2216422..2216715(-) (comGC) [Bacillus sp. FSL R5-0397]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLS
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=983928 NSQ70_RS11295 WP_024718841.1 2216422..2216715(-) (comGC) [Bacillus sp. FSL R5-0397]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTATCT
TGTCCAAATGGAAAGGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

40.217

94.845

0.381
  comGC Staphylococcus aureus N315

40.217

94.845

0.381

Multiple sequence alignment