Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSQ70_RS11245 | Genome accession | NZ_CP151992 |
| Coordinates | 2211586..2211921 (+) | Length | 111 a.a. |
| NCBI ID | WP_017357978.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL R5-0397 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2206586..2216921
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ70_RS11225 (NSQ70_11225) | gcvT | 2207062..2208159 (-) | 1098 | WP_159159767.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSQ70_RS11230 (NSQ70_11230) | - | 2208721..2210391 (+) | 1671 | WP_326111036.1 | SNF2-related protein | - |
| NSQ70_RS11235 (NSQ70_11235) | - | 2210406..2211203 (+) | 798 | WP_017367588.1 | YqhG family protein | - |
| NSQ70_RS11240 (NSQ70_11240) | - | 2211388..2211552 (+) | 165 | WP_008342197.1 | anti-repressor SinI family protein | - |
| NSQ70_RS11245 (NSQ70_11245) | sinR | 2211586..2211921 (+) | 336 | WP_017357978.1 | helix-turn-helix domain-containing protein | Regulator |
| NSQ70_RS11250 (NSQ70_11250) | - | 2211989..2212789 (-) | 801 | WP_326111034.1 | TasA family protein | - |
| NSQ70_RS11255 (NSQ70_11255) | - | 2212848..2213420 (-) | 573 | WP_017357979.1 | signal peptidase I | - |
| NSQ70_RS11260 (NSQ70_11260) | tapA | 2213470..2213997 (-) | 528 | WP_326111031.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSQ70_RS11265 (NSQ70_11265) | - | 2214250..2214576 (+) | 327 | WP_039166025.1 | DUF3889 domain-containing protein | - |
| NSQ70_RS11270 (NSQ70_11270) | - | 2214611..2214805 (-) | 195 | WP_342502160.1 | YqzE family protein | - |
| NSQ70_RS11275 (NSQ70_11275) | comGG | 2214866..2215249 (-) | 384 | WP_024718845.1 | competence type IV pilus minor pilin ComGG | - |
| NSQ70_RS11280 (NSQ70_11280) | comGF | 2215246..2215743 (-) | 498 | WP_039166031.1 | competence type IV pilus minor pilin ComGF | - |
| NSQ70_RS11285 (NSQ70_11285) | comGE | 2215685..2215999 (-) | 315 | WP_039166034.1 | competence type IV pilus minor pilin ComGE | - |
| NSQ70_RS11290 (NSQ70_11290) | comGD | 2215983..2216429 (-) | 447 | WP_039166035.1 | competence type IV pilus minor pilin ComGD | - |
| NSQ70_RS11295 (NSQ70_11295) | comGC | 2216422..2216715 (-) | 294 | WP_024718841.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12936.47 Da Isoelectric Point: 4.8062
>NTDB_id=983927 NSQ70_RS11245 WP_017357978.1 2211586..2211921(+) (sinR) [Bacillus sp. FSL R5-0397]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=983927 NSQ70_RS11245 WP_017357978.1 2211586..2211921(+) (sinR) [Bacillus sp. FSL R5-0397]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |