Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSS80_RS19840 Genome accession   NZ_CP151985
Coordinates   3821115..3821657 (-) Length   180 a.a.
NCBI ID   WP_342498389.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0350     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3816115..3826657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS80_RS19815 (NSS80_19815) - 3816388..3816996 (-) 609 WP_342498388.1 alpha/beta hydrolase -
  NSS80_RS19820 (NSS80_19820) - 3816993..3817964 (-) 972 WP_041118452.1 ring-cleaving dioxygenase -
  NSS80_RS19825 (NSS80_19825) opuFB 3818156..3819673 (-) 1518 WP_025093672.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  NSS80_RS19830 (NSS80_19830) - 3819666..3820631 (-) 966 WP_041118478.1 ABC transporter ATP-binding protein -
  NSS80_RS19835 (NSS80_19835) rpsR 3820835..3821074 (-) 240 WP_008359105.1 30S ribosomal protein S18 -
  NSS80_RS19840 (NSS80_19840) ssbA 3821115..3821657 (-) 543 WP_342498389.1 single-stranded DNA-binding protein SsbA Machinery gene
  NSS80_RS19845 (NSS80_19845) rpsF 3821694..3821981 (-) 288 WP_024424058.1 30S ribosomal protein S6 -
  NSS80_RS19850 (NSS80_19850) ychF 3822090..3823190 (-) 1101 WP_024424059.1 redox-regulated ATPase YchF -
  NSS80_RS19855 (NSS80_19855) - 3823407..3823613 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  NSS80_RS19860 (NSS80_19860) - 3823909..3825228 (+) 1320 WP_317222438.1 hydrolase -
  NSS80_RS19865 (NSS80_19865) - 3825244..3825654 (+) 411 WP_024424061.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19663.19 Da        Isoelectric Point: 4.5187

>NTDB_id=983523 NSS80_RS19840 WP_342498389.1 3821115..3821657(-) (ssbA) [Bacillus sp. FSL M8-0350]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFENDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=983523 NSS80_RS19840 WP_342498389.1 3821115..3821657(-) (ssbA) [Bacillus sp. FSL M8-0350]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTTAAT
GATGACCCATTTGAGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85

100

0.85
  ssb Latilactobacillus sakei subsp. sakei 23K

54.839

100

0.567
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

34.574

100

0.361

Multiple sequence alignment