Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   V3C22_RS02650 Genome accession   NZ_CP183775
Coordinates   540380..541036 (-) Length   218 a.a.
NCBI ID   WP_002276866.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535380..546036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS02625 (V3C22_02625) trpD 535814..536821 (+) 1008 WP_002262053.1 anthranilate phosphoribosyltransferase -
  V3C22_RS02630 (V3C22_02630) trpC 536814..537581 (+) 768 WP_226707249.1 indole-3-glycerol phosphate synthase TrpC -
  V3C22_RS02635 (V3C22_02635) - 537568..538149 (+) 582 WP_002262055.1 phosphoribosylanthranilate isomerase -
  V3C22_RS02640 (V3C22_02640) trpB 538146..539357 (+) 1212 WP_088724027.1 tryptophan synthase subunit beta -
  V3C22_RS02645 (V3C22_02645) trpA 539361..540143 (+) 783 WP_002264437.1 tryptophan synthase subunit alpha -
  V3C22_RS02650 (V3C22_02650) cclA/cilC 540380..541036 (-) 657 WP_002276866.1 prepilin peptidase Machinery gene
  V3C22_RS02655 (V3C22_02655) dpr 541137..541664 (+) 528 WP_002266317.1 DNA starvation/stationary phase protection protein -
  V3C22_RS02660 (V3C22_02660) - 541871..542077 (+) 207 WP_002262060.1 YqgQ family protein -
  V3C22_RS02665 (V3C22_02665) - 542070..543041 (+) 972 WP_002262061.1 ROK family glucokinase -
  V3C22_RS02670 (V3C22_02670) - 543051..543440 (+) 390 WP_002262062.1 rhodanese-like domain-containing protein -
  V3C22_RS02675 (V3C22_02675) typA 543673..545517 (+) 1845 WP_002274956.1 translational GTPase TypA -
  V3C22_RS02680 (V3C22_02680) - 545546..545800 (+) 255 WP_002262064.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24885.12 Da        Isoelectric Point: 8.5688

>NTDB_id=983239 V3C22_RS02650 WP_002276866.1 540380..541036(-) (cclA/cilC) [Streptococcus mutans strain Xc]
MKLILFFMLGASLGSFFGLVVDRYPQKSIIFPRSHCNKCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFL
YLATLALSLNLQQIIWIIQIASLLGILYSLLFQKYKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=983239 V3C22_RS02650 WP_002276866.1 540380..541036(-) (cclA/cilC) [Streptococcus mutans strain Xc]
ATGAAACTTATTTTATTTTTTATGTTGGGAGCTTCTCTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAAGTGTTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTGATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCCTC
TATCTGGCTACTTTGGCACTTTCTCTTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTACAGCCTGCTTTTTCAAAAGTACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

43.256

98.624

0.427
  cclA/cilC Streptococcus mitis NCTC 12261

42.326

98.624

0.417
  cclA/cilC Streptococcus pneumoniae Rx1

42.723

97.706

0.417
  cclA/cilC Streptococcus pneumoniae D39

42.723

97.706

0.417
  cclA/cilC Streptococcus pneumoniae R6

42.723

97.706

0.417
  cclA/cilC Streptococcus pneumoniae TIGR4

41.784

97.706

0.408