Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   V3C22_RS02425 Genome accession   NZ_CP183775
Coordinates   497958..498623 (+) Length   221 a.a.
NCBI ID   WP_002267952.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 492958..503623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS02405 (V3C22_02405) - 493516..494607 (+) 1092 WP_226707131.1 glycerol dehydrogenase -
  V3C22_RS02410 (V3C22_02410) cysK 494941..495867 (-) 927 WP_019315688.1 cysteine synthase A -
  V3C22_RS02415 (V3C22_02415) - 495958..496587 (-) 630 WP_002263027.1 YigZ family protein -
  V3C22_RS02420 (V3C22_02420) comFA/cflA 496660..497961 (+) 1302 WP_002270130.1 DEAD/DEAH box helicase Machinery gene
  V3C22_RS02425 (V3C22_02425) comFC/cflB 497958..498623 (+) 666 WP_002267952.1 ComF family protein Machinery gene
  V3C22_RS02430 (V3C22_02430) hpf 498702..499250 (+) 549 WP_002263024.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  V3C22_RS02435 (V3C22_02435) - 499374..500468 (+) 1095 WP_226707127.1 hypothetical protein -
  V3C22_RS02440 (V3C22_02440) - 500488..502188 (+) 1701 WP_226707129.1 TcaA 3rd/4th domain-containing protein -
  V3C22_RS02445 (V3C22_02445) - 502268..502903 (-) 636 WP_002286443.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26061.10 Da        Isoelectric Point: 8.9825

>NTDB_id=983236 V3C22_RS02425 WP_002267952.1 497958..498623(+) (comFC/cflB) [Streptococcus mutans strain Xc]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSTYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=983236 V3C22_RS02425 WP_002267952.1 497958..498623(+) (comFC/cflB) [Streptococcus mutans strain Xc]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTTTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTTTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTACTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTAGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448
  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443
  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439