Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSQ17_RS16890 Genome accession   NZ_CP151975
Coordinates   3246492..3247619 (-) Length   375 a.a.
NCBI ID   WP_082627032.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0629     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3241492..3252619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ17_RS16855 (NSQ17_16855) flgL 3241675..3242586 (-) 912 WP_039169789.1 flagellar hook-associated protein FlgL -
  NSQ17_RS16860 (NSQ17_16860) flgK 3242595..3244115 (-) 1521 WP_024719239.1 flagellar hook-associated protein FlgK -
  NSQ17_RS16865 (NSQ17_16865) - 3244131..3244613 (-) 483 WP_041507839.1 flagellar protein FlgN -
  NSQ17_RS16870 (NSQ17_16870) flgM 3244632..3244895 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ17_RS16875 (NSQ17_16875) - 3244975..3245394 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NSQ17_RS16880 (NSQ17_16880) - 3245451..3246173 (-) 723 WP_272950036.1 ComF family protein -
  NSQ17_RS16885 (NSQ17_16885) - 3246134..3246427 (-) 294 WP_008348267.1 competence protein ComFB -
  NSQ17_RS16890 (NSQ17_16890) comFA 3246492..3247619 (-) 1128 WP_082627032.1 DEAD/DEAH box helicase Machinery gene
  NSQ17_RS16895 (NSQ17_16895) - 3247991..3248833 (-) 843 WP_024719242.1 DegV family protein -
  NSQ17_RS16900 (NSQ17_16900) degU 3249045..3249734 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ17_RS16905 (NSQ17_16905) degS 3249799..3250974 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  NSQ17_RS16910 (NSQ17_16910) - 3251196..3251864 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 42888.88 Da        Isoelectric Point: 10.4727

>NTDB_id=982930 NSQ17_RS16890 WP_082627032.1 3246492..3247619(-) (comFA) [Bacillus sp. FSL W8-0629]
MLGKVSECGFLYEWTGPQKKETRRVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYALNNGM
SVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDERLQF
AVLKSMKKTGVRIYLSATPSKKMQKDVAHRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHEHITK
KKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIF
SESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=982930 NSQ17_RS16890 WP_082627032.1 3246492..3247619(-) (comFA) [Bacillus sp. FSL W8-0629]
ATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAGACGAGTTGAATT
AACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAAACAAATTTGATC
TGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGTATAAAATATGCGCTAAATAACGGAATG
AGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTCGAACCTCGAATGAGAAAGGCATTTCAAGGACTGAA
TATAGCTGCACTTTATGGCGGGAGTTCTCAAAGGTTTCAAATGGCACCGCTTATGATCGCTACAACCCATCAGCTAATGA
GATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAACGGCTTCAGTTT
GCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAATGCAAAAGGATGT
TGCTCATAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAACATTTCAATGGG
TTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAACATATCACAAAG
AAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGGTCAAGATGTAAA
TGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGATATGATGTATTGG
TTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAGGTGGGCGTATTAGGTGCGGAATCTCCTATTTTT
TCAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGTATACTTTTTTCA
TTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAAAAGAGTTTTCTG
AAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(32-180)

Helicase conserved C-terminal domain (Helicase_C)

(236-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

55.946

98.667

0.552
  comFA/cflA Streptococcus pneumoniae Rx1

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae D39

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae R6

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae TIGR4

40.395

94.4

0.381
  comFA Latilactobacillus sakei subsp. sakei 23K

38.587

98.133

0.379
  comFA/cflA Streptococcus mitis NCTC 12261

40.113

94.4

0.379
  comFA/cflA Streptococcus mitis SK321

38.983

94.4

0.368
  comFA Lactococcus lactis subsp. cremoris KW2

37.432

97.6

0.365

Multiple sequence alignment