Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSQ17_RS16900 Genome accession   NZ_CP151975
Coordinates   3249045..3249734 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL W8-0629     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3244045..3254734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ17_RS16865 (NSQ17_16865) - 3244131..3244613 (-) 483 WP_041507839.1 flagellar protein FlgN -
  NSQ17_RS16870 (NSQ17_16870) flgM 3244632..3244895 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ17_RS16875 (NSQ17_16875) - 3244975..3245394 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NSQ17_RS16880 (NSQ17_16880) - 3245451..3246173 (-) 723 WP_272950036.1 ComF family protein -
  NSQ17_RS16885 (NSQ17_16885) - 3246134..3246427 (-) 294 WP_008348267.1 competence protein ComFB -
  NSQ17_RS16890 (NSQ17_16890) comFA 3246492..3247619 (-) 1128 WP_082627032.1 DEAD/DEAH box helicase Machinery gene
  NSQ17_RS16895 (NSQ17_16895) - 3247991..3248833 (-) 843 WP_024719242.1 DegV family protein -
  NSQ17_RS16900 (NSQ17_16900) degU 3249045..3249734 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ17_RS16905 (NSQ17_16905) degS 3249799..3250974 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  NSQ17_RS16910 (NSQ17_16910) - 3251196..3251864 (+) 669 WP_017357860.1 YigZ family protein -
  NSQ17_RS16915 (NSQ17_16915) - 3251849..3252946 (+) 1098 WP_024719244.1 LCP family protein -
  NSQ17_RS16920 (NSQ17_16920) - 3252984..3254051 (-) 1068 WP_024719245.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=982931 NSQ17_RS16900 WP_008348273.1 3249045..3249734(-) (degU) [Bacillus sp. FSL W8-0629]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=982931 NSQ17_RS16900 WP_008348273.1 3249045..3249734(-) (degU) [Bacillus sp. FSL W8-0629]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment