Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSQ17_RS11560 Genome accession   NZ_CP151975
Coordinates   2249711..2250004 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus sp. FSL W8-0629     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2244711..2255004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ17_RS11510 (NSQ17_11510) sinR 2244875..2245210 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  NSQ17_RS11515 (NSQ17_11515) - 2245278..2246078 (-) 801 WP_008342195.1 TasA family protein -
  NSQ17_RS11520 (NSQ17_11520) - 2246137..2246709 (-) 573 WP_017357979.1 signal peptidase I -
  NSQ17_RS11525 (NSQ17_11525) tapA 2246759..2247286 (-) 528 WP_160757525.1 amyloid fiber anchoring/assembly protein TapA -
  NSQ17_RS11530 (NSQ17_11530) - 2247539..2247865 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  NSQ17_RS11535 (NSQ17_11535) - 2247900..2248094 (-) 195 WP_024718846.1 YqzE family protein -
  NSQ17_RS11540 (NSQ17_11540) comGG 2248155..2248538 (-) 384 WP_160757524.1 competence type IV pilus minor pilin ComGG -
  NSQ17_RS11545 (NSQ17_11545) comGF 2248535..2249032 (-) 498 WP_160757523.1 competence type IV pilus minor pilin ComGF -
  NSQ17_RS11550 (NSQ17_11550) comGE 2248974..2249252 (-) 279 WP_306794195.1 competence type IV pilus minor pilin ComGE -
  NSQ17_RS11555 (NSQ17_11555) comGD 2249272..2249718 (-) 447 WP_342467442.1 competence type IV pilus minor pilin ComGD -
  NSQ17_RS11560 (NSQ17_11560) comGC 2249711..2250004 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  NSQ17_RS11565 (NSQ17_11565) comGB 2250021..2251061 (-) 1041 WP_024718840.1 competence type IV pilus assembly protein ComGB -
  NSQ17_RS11570 (NSQ17_11570) comGA 2251042..2252112 (-) 1071 WP_058336648.1 competence type IV pilus ATPase ComGA Machinery gene
  NSQ17_RS11575 (NSQ17_11575) - 2252571..2253443 (-) 873 WP_035390819.1 STAS domain-containing protein -
  NSQ17_RS11585 (NSQ17_11585) - 2253669..2254049 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NSQ17_RS11590 (NSQ17_11590) - 2254273..2254515 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=982913 NSQ17_RS11560 WP_008342186.1 2249711..2250004(-) (comGC) [Bacillus sp. FSL W8-0629]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=982913 NSQ17_RS11560 WP_008342186.1 2249711..2250004(-) (comGC) [Bacillus sp. FSL W8-0629]
ATGAATGATAAAGGATTTACACTGTTAGAGATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCAAATGGAAAGGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment