Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSQ17_RS11510 | Genome accession | NZ_CP151975 |
| Coordinates | 2244875..2245210 (+) | Length | 111 a.a. |
| NCBI ID | WP_017357978.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL W8-0629 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2239875..2250210
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ17_RS11490 (NSQ17_11490) | gcvT | 2240351..2241448 (-) | 1098 | WP_072367814.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSQ17_RS11495 (NSQ17_11495) | - | 2242010..2243680 (+) | 1671 | WP_008342199.1 | SNF2-related protein | - |
| NSQ17_RS11500 (NSQ17_11500) | - | 2243695..2244492 (+) | 798 | WP_017367588.1 | YqhG family protein | - |
| NSQ17_RS11505 (NSQ17_11505) | - | 2244677..2244841 (+) | 165 | WP_008342197.1 | anti-repressor SinI family protein | - |
| NSQ17_RS11510 (NSQ17_11510) | sinR | 2244875..2245210 (+) | 336 | WP_017357978.1 | helix-turn-helix domain-containing protein | Regulator |
| NSQ17_RS11515 (NSQ17_11515) | - | 2245278..2246078 (-) | 801 | WP_008342195.1 | TasA family protein | - |
| NSQ17_RS11520 (NSQ17_11520) | - | 2246137..2246709 (-) | 573 | WP_017357979.1 | signal peptidase I | - |
| NSQ17_RS11525 (NSQ17_11525) | tapA | 2246759..2247286 (-) | 528 | WP_160757525.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSQ17_RS11530 (NSQ17_11530) | - | 2247539..2247865 (+) | 327 | WP_039166025.1 | DUF3889 domain-containing protein | - |
| NSQ17_RS11535 (NSQ17_11535) | - | 2247900..2248094 (-) | 195 | WP_024718846.1 | YqzE family protein | - |
| NSQ17_RS11540 (NSQ17_11540) | comGG | 2248155..2248538 (-) | 384 | WP_160757524.1 | competence type IV pilus minor pilin ComGG | - |
| NSQ17_RS11545 (NSQ17_11545) | comGF | 2248535..2249032 (-) | 498 | WP_160757523.1 | competence type IV pilus minor pilin ComGF | - |
| NSQ17_RS11550 (NSQ17_11550) | comGE | 2248974..2249252 (-) | 279 | WP_306794195.1 | competence type IV pilus minor pilin ComGE | - |
| NSQ17_RS11555 (NSQ17_11555) | comGD | 2249272..2249718 (-) | 447 | WP_342467442.1 | competence type IV pilus minor pilin ComGD | - |
| NSQ17_RS11560 (NSQ17_11560) | comGC | 2249711..2250004 (-) | 294 | WP_008342186.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12936.47 Da Isoelectric Point: 4.8062
>NTDB_id=982912 NSQ17_RS11510 WP_017357978.1 2244875..2245210(+) (sinR) [Bacillus sp. FSL W8-0629]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=982912 NSQ17_RS11510 WP_017357978.1 2244875..2245210(+) (sinR) [Bacillus sp. FSL W8-0629]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |