Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSS78_RS11430 | Genome accession | NZ_CP151974 |
| Coordinates | 2273835..2274170 (+) | Length | 111 a.a. |
| NCBI ID | WP_012010555.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL W8-0920 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2268835..2279170
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSS78_RS11410 (NSS78_11410) | gcvT | 2269312..2270409 (-) | 1098 | WP_212045916.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSS78_RS11415 (NSS78_11415) | - | 2270972..2272642 (+) | 1671 | WP_327839411.1 | SNF2-related protein | - |
| NSS78_RS11420 (NSS78_11420) | - | 2272657..2273454 (+) | 798 | WP_003217448.1 | YqhG family protein | - |
| NSS78_RS11425 (NSS78_11425) | - | 2273637..2273801 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| NSS78_RS11430 (NSS78_11430) | sinR | 2273835..2274170 (+) | 336 | WP_012010555.1 | transcriptional regulator SinR | Regulator |
| NSS78_RS11435 (NSS78_11435) | - | 2274238..2275038 (-) | 801 | WP_003217403.1 | TasA family protein | - |
| NSS78_RS11440 (NSS78_11440) | - | 2275096..2275668 (-) | 573 | WP_003217306.1 | signal peptidase I | - |
| NSS78_RS11445 (NSS78_11445) | tapA | 2275720..2276247 (-) | 528 | WP_212045914.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSS78_RS11450 (NSS78_11450) | - | 2276547..2276825 (+) | 279 | WP_249118272.1 | DUF3889 domain-containing protein | - |
| NSS78_RS11455 (NSS78_11455) | - | 2276859..2277053 (-) | 195 | WP_034620826.1 | YqzE family protein | - |
| NSS78_RS11460 (NSS78_11460) | comGG | 2277113..2277496 (-) | 384 | WP_212045913.1 | competence type IV pilus minor pilin ComGG | - |
| NSS78_RS11465 (NSS78_11465) | comGF | 2277493..2278023 (-) | 531 | WP_249118253.1 | competence type IV pilus minor pilin ComGF | - |
| NSS78_RS11470 (NSS78_11470) | comGE | 2277932..2278249 (-) | 318 | WP_003217390.1 | competence type IV pilus minor pilin ComGE | - |
| NSS78_RS11475 (NSS78_11475) | comGD | 2278233..2278679 (-) | 447 | WP_212045911.1 | competence type IV pilus minor pilin ComGD | - |
| NSS78_RS11480 (NSS78_11480) | comGC | 2278672..2278965 (-) | 294 | WP_212045910.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 13001.59 Da Isoelectric Point: 5.2831
>NTDB_id=982850 NSS78_RS11430 WP_012010555.1 2273835..2274170(+) (sinR) [Bacillus sp. FSL W8-0920]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=982850 NSS78_RS11430 WP_012010555.1 2273835..2274170(+) (sinR) [Bacillus sp. FSL W8-0920]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |