Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NSS78_RS11245 Genome accession   NZ_CP151974
Coordinates   2241664..2243400 (-) Length   578 a.a.
NCBI ID   WP_003215540.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0920     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2236664..2248400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS78_RS11230 (NSS78_11230) - 2237543..2238643 (-) 1101 WP_212045926.1 Rap family tetratricopeptide repeat protein -
  NSS78_RS11235 (NSS78_11235) spo0A 2239099..2239902 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  NSS78_RS11240 (NSS78_11240) spoIVB 2240188..2241465 (-) 1278 WP_212045925.1 SpoIVB peptidase -
  NSS78_RS11245 (NSS78_11245) recN 2241664..2243400 (-) 1737 WP_003215540.1 DNA repair protein RecN Machinery gene
  NSS78_RS11250 (NSS78_11250) argR 2243434..2243883 (-) 450 WP_003215836.1 transcriptional regulator ArgR -
  NSS78_RS11255 (NSS78_11255) - 2244043..2244897 (-) 855 WP_137054989.1 TlyA family RNA methyltransferase -
  NSS78_RS11260 (NSS78_11260) dxs 2244894..2246795 (-) 1902 WP_327839407.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NSS78_RS11265 (NSS78_11265) - 2246946..2247836 (-) 891 WP_327839408.1 farnesyl diphosphate synthase -
  NSS78_RS11270 (NSS78_11270) - 2247826..2248086 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64795.62 Da        Isoelectric Point: 4.8146

>NTDB_id=982849 NSS78_RS11245 WP_003215540.1 2241664..2243400(-) (recN) [Bacillus sp. FSL W8-0920]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEHGIDATDEMMILRRDMNNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDLIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=982849 NSS78_RS11245 WP_003215540.1 2241664..2243400(-) (recN) [Bacillus sp. FSL W8-0920]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACAGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCCATCATGATTGATGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTACCAGCAGCTGACCACCCTGTATTTGCTTTA
TGCGAAGAGCATGGAATTGACGCAACGGATGAAATGATGATTCTTCGCCGTGATATGAACAATAACGGGAAAAGCATATG
CCGCATCAATGGCAAGCTCGTTACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTG
TCACAATATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAACTAAAACAGCTCTCTGAGAATGAGCAGGAAAT
GGTGCACCGGTTAGATTTACTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAGCAGGGGGGACTTGATTGGGTTGGCATGTCATCGAGCGAGCTCGAGCAGGTTTCTGAGATCAACGACGATCTGAAAAA
GCTATCAGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGCTGGATCAATTAG
AGTTCGACCCAGCACGTCTTGATTTAATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAGTACGGGACAACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGTCACCTGCAGAC
GCTTAAAAACAAACTGGATGCAATGAGCCGTGACGCCCTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCGACGTTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGAAAAAACGGAATCGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCCTCGGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCGGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGCGTAAGCGGCAGAGTTGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCTAAACGCTCTAAAGCAGGCAGAACACTGACAA
GCGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAACTGACA
AAACAGCACGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.74

100

0.747

Multiple sequence alignment