Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSQ52_RS16815 Genome accession   NZ_CP151973
Coordinates   3257885..3258574 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL W8-1141     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3252885..3263574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ52_RS16780 (NSQ52_16780) - 3252971..3253453 (-) 483 WP_342473618.1 flagellar protein FlgN -
  NSQ52_RS16785 (NSQ52_16785) flgM 3253472..3253735 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ52_RS16790 (NSQ52_16790) - 3253815..3254234 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NSQ52_RS16795 (NSQ52_16795) comFC 3254291..3254977 (-) 687 WP_172793290.1 ComF family protein Machinery gene
  NSQ52_RS16800 (NSQ52_16800) - 3254974..3255267 (-) 294 WP_008348267.1 competence protein ComFB -
  NSQ52_RS16805 (NSQ52_16805) comFA 3255332..3256459 (-) 1128 WP_342473620.1 DEAD/DEAH box helicase Machinery gene
  NSQ52_RS16810 (NSQ52_16810) - 3256831..3257673 (-) 843 WP_342473622.1 DegV family protein -
  NSQ52_RS16815 (NSQ52_16815) degU 3257885..3258574 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ52_RS16820 (NSQ52_16820) degS 3258639..3259814 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  NSQ52_RS16825 (NSQ52_16825) - 3260036..3260704 (+) 669 WP_017357860.1 YigZ family protein -
  NSQ52_RS16830 (NSQ52_16830) - 3260689..3261786 (+) 1098 WP_024719244.1 LCP family protein -
  NSQ52_RS16835 (NSQ52_16835) - 3261824..3262891 (-) 1068 WP_007499956.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=982810 NSQ52_RS16815 WP_008348273.1 3257885..3258574(-) (degU) [Bacillus sp. FSL W8-1141]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=982810 NSQ52_RS16815 WP_008348273.1 3257885..3258574(-) (degU) [Bacillus sp. FSL W8-1141]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment