Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSQ51_RS16615 Genome accession   NZ_CP151966
Coordinates   3134010..3134504 (-) Length   164 a.a.
NCBI ID   WP_033016904.1    Uniprot ID   -
Organism   Geobacillus sp. FSL K6-0789     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3129010..3139504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ51_RS16595 (NSQ51_16595) rplI 3130257..3130706 (-) 450 WP_033008865.1 50S ribosomal protein L9 -
  NSQ51_RS16600 (NSQ51_16600) - 3130703..3132679 (-) 1977 WP_033016902.1 DHH family phosphoesterase -
  NSQ51_RS16605 (NSQ51_16605) - 3132727..3133653 (-) 927 WP_033016903.1 YybS family protein -
  NSQ51_RS16610 (NSQ51_16610) rpsR 3133732..3133968 (-) 237 WP_008880812.1 30S ribosomal protein S18 -
  NSQ51_RS16615 (NSQ51_16615) ssbA 3134010..3134504 (-) 495 WP_033016904.1 single-stranded DNA-binding protein Machinery gene
  NSQ51_RS16620 (NSQ51_16620) rpsF 3134534..3134821 (-) 288 WP_033008861.1 30S ribosomal protein S6 -
  NSQ51_RS16625 (NSQ51_16625) ychF 3135081..3136181 (-) 1101 WP_049624894.1 redox-regulated ATPase YchF -
  NSQ51_RS16630 (NSQ51_16630) - 3136249..3136863 (-) 615 Protein_3201 molybdopterin-dependent oxidoreductase -
  NSQ51_RS16635 (NSQ51_16635) - 3137022..3137219 (-) 198 WP_033008859.1 DUF951 domain-containing protein -
  NSQ51_RS16640 (NSQ51_16640) - 3137239..3138138 (-) 900 WP_064213522.1 mechanosensitive ion channel family protein -
  NSQ51_RS16645 (NSQ51_16645) yyaC 3138326..3138946 (+) 621 WP_033016907.1 spore protease YyaC -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18246.17 Da        Isoelectric Point: 4.7035

>NTDB_id=982518 NSQ51_RS16615 WP_033016904.1 3134010..3134504(-) (ssbA) [Geobacillus sp. FSL K6-0789]
MINRVILVGRLTKDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADNVQFLEPKGSNEQRGAAAGGYYGDPFPFGQDQNHRHSSEKGVGLLDEDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=982518 NSQ51_RS16615 WP_033016904.1 3134010..3134504(-) (ssbA) [Geobacillus sp. FSL K6-0789]
ATGATTAACCGCGTCATTTTGGTCGGCAGGTTAACGAAAGATCCGGAGTTGCGCTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTCACGCTCGCGGTCAACCGCCCGTTTACGAATCAGCAGGGCGAGCGGGAGGCGGATTTTATTCAATGCGTCGTTT
GGCGCCGCCAAGCGGAAAACGTCGCCAACTTCTTGAAAAAAGGGAGCTTGGCCGGGGTTGACGGCCGGCTGCAAACCCGC
AGCTATGAAAACCAGGAAGGCCGACGTGTGTATGTGACGGAAGTGGTGGCTGACAACGTCCAATTTCTTGAGCCAAAAGG
AAGCAATGAGCAGCGTGGGGCAGCAGCAGGCGGATACTATGGGGATCCGTTCCCATTCGGACAAGATCAGAACCACCGTC
ATTCAAGCGAGAAAGGGGTTGGCCTCCTCGACGAAGATCCTTTTGCCAATGACGGCCAGCCGATTGATATTTCCGACGAT
GATTTACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68

100

0.726
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.622
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

64.634

0.421
  ssb Vibrio cholerae strain A1552

33.52

100

0.366

Multiple sequence alignment