Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ACAK35_RS04620 Genome accession   NZ_AP031576
Coordinates   981882..982886 (-) Length   334 a.a.
NCBI ID   WP_001154002.1    Uniprot ID   A3M7W1
Organism   Acinetobacter baumannii strain JUNP402     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 976882..987886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK35_RS04595 (JUNP402_0916) tolA 977200..978546 (-) 1347 WP_001039159.1 cell envelope integrity protein TolA -
  ACAK35_RS04600 (JUNP402_0917) tolR 978550..979002 (-) 453 WP_001007564.1 protein TolR -
  ACAK35_RS04605 (JUNP402_0918) tolQ 979002..979700 (-) 699 WP_000224630.1 protein TolQ -
  ACAK35_RS04610 (JUNP402_0919) ybgC 979724..980131 (-) 408 WP_001273591.1 tol-pal system-associated acyl-CoA thioesterase -
  ACAK35_RS04615 (JUNP402_0920) - 980342..981676 (-) 1335 WP_000276836.1 M20 family metallopeptidase -
  ACAK35_RS04620 (JUNP402_0921) ruvB 981882..982886 (-) 1005 WP_001154002.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACAK35_RS04625 (JUNP402_0922) ruvA 982895..983494 (-) 600 WP_000578663.1 Holliday junction branch migration protein RuvA -
  ACAK35_RS04630 (JUNP402_0923) - 983586..984926 (-) 1341 WP_000437081.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36815.05 Da        Isoelectric Point: 4.7936

>NTDB_id=98242 ACAK35_RS04620 WP_001154002.1 981882..982886(-) (ruvB) [Acinetobacter baumannii strain JUNP402]
MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNL
KSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTR
AGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN
HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQ
SYLQFGMTPPEPKN

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=98242 ACAK35_RS04620 WP_001154002.1 981882..982886(-) (ruvB) [Acinetobacter baumannii strain JUNP402]
ATGCAAGACCGTCTAATCAGTGGAACAGAAAAACCTGAAGATCATTTTGATCGGGCTATTCGACCGACTTCACTTGCCGA
TTATATCGGGCAACCAGTCGTACGCGAGCAAATGGAAATTTTCATCGGTGCGGCTCGTGGTCGTGGTGAAGCACTCGATC
ACACACTGATTTTCGGTCCACCGGGCTTAGGAAAAACCACGCTTGCCAATATTATTGCGCGTGAAATGGGTGGCAATCTC
AAATCCACTTCAGGGCCTGTTTTAGAGCGTGCGGGTGATTTGGCTGCAATGCTGACTAACCTTGAAGAAGGCGATGTTTT
ATTTATTGATGAAATTCACCGTCTTTCACCAGTGATTGAAGAAATTCTTTATCCGGCAATGGAAGATTACCAACTTGATA
TCATGATTGGTGAAGGTCCTGCTGCTCGTTCAATTAAACTCGATTTACCACCTTTTACGCTCGTTGCTGCGACCACACGT
GCCGGCTTACTCACCTCGCCTCTACGTGACCGTTTCGGTATTGTGCAACGTCTTGAATTCTATTCTGTAGAAGACCTAAC
TCACATCGTGTCACGATCTGCAAACCTCATGGATGTACCCATTACAGTTGAGGGTGCAGAAGAAGTTGCACGCCGTTCAC
GCGGAACACCGCGTATTGCCAATCGTTTATTACGCCGTGTACGTGACTATGCACAAGTAAAAGGTACAGGCGAAGTTAAC
CATGAAATGGCACAACGTGCGCTTGATATGCTTAATGTCGATAAAGCTGGTTTAGATACCTTAGACCGACGTTATTTAAG
TATGTTGTTAGAACGTTTTGATGGTGGACCTGCTGGTGTTGAAGCCCTTGCAGCTGCTATGGCTGAAGATAGCGGAACAC
TTGAAGATGTTATTGAACCTTATTTAATTCAGCAAGGTTATGTTATGCGTACTGCACGAGGTCGCATTGCAACCAACCAA
TCTTATTTGCAGTTTGGCATGACGCCACCTGAGCCTAAAAACTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-322)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3M7W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

57.704

99.102

0.572
  ruvB Synechocystis sp. PCC 6803

57.325

94.012

0.539
  ruvB Streptococcus pneumoniae TIGR4

56.113

95.509

0.536
  ruvB Streptococcus pneumoniae R6

56.113

95.509

0.536
  ruvB Streptococcus pneumoniae D39

56.113

95.509

0.536
  ruvB Helicobacter pylori 26695

54.934

91.018

0.5

Multiple sequence alignment