Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHI30_RS21625 Genome accession   NZ_CP151961
Coordinates   4259812..4260324 (-) Length   170 a.a.
NCBI ID   WP_003178024.1    Uniprot ID   A0A6I1MGI1
Organism   Bacillus sp. FSL L8-0528     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4254812..4265324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS21595 (MHI30_21595) - 4255205..4255345 (-) 141 WP_020453636.1 hypothetical protein -
  MHI30_RS21600 (MHI30_21600) - 4255505..4255981 (+) 477 WP_075751800.1 spore coat protein -
  MHI30_RS21605 (MHI30_21605) - 4256024..4256443 (-) 420 WP_075751801.1 universal stress protein -
  MHI30_RS21610 (MHI30_21610) - 4256462..4257928 (-) 1467 WP_075751802.1 SulP family inorganic anion transporter -
  MHI30_RS21615 (MHI30_21615) - 4258142..4259443 (+) 1302 WP_145651832.1 MFS transporter -
  MHI30_RS21620 (MHI30_21620) rpsR 4259521..4259760 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  MHI30_RS21625 (MHI30_21625) ssbA 4259812..4260324 (-) 513 WP_003178024.1 single-stranded DNA-binding protein SsbA Machinery gene
  MHI30_RS21630 (MHI30_21630) rpsF 4260371..4260658 (-) 288 WP_003178026.1 30S ribosomal protein S6 -
  MHI30_RS21635 (MHI30_21635) ychF 4260772..4261872 (-) 1101 WP_075751803.1 redox-regulated ATPase YchF -
  MHI30_RS21640 (MHI30_21640) - 4262051..4262257 (-) 207 WP_011201785.1 DUF951 domain-containing protein -
  MHI30_RS21645 (MHI30_21645) - 4262345..4263358 (-) 1014 WP_075751805.1 GerAB/ArcD/ProY family transporter -
  MHI30_RS21650 (MHI30_21650) yyaC 4263661..4264278 (+) 618 WP_075751806.1 spore protease YyaC -
  MHI30_RS21655 (MHI30_21655) - 4264315..4265163 (-) 849 WP_075751807.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18373.01 Da        Isoelectric Point: 4.9367

>NTDB_id=982295 MHI30_RS21625 WP_003178024.1 4259812..4260324(-) (ssbA) [Bacillus sp. FSL L8-0528]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=982295 MHI30_RS21625 WP_003178024.1 4259812..4260324(-) (ssbA) [Bacillus sp. FSL L8-0528]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCCAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAATGTTGCGAATTTCCTTAAAAAGGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCAGCAAGGACAGCGTGTATACGTCACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCAGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAGAATGAACCGGCTCCAT
TCGGCGGCAGTCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAACGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MGI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.302

100

0.853
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.382

Multiple sequence alignment