Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NST83_RS25440 Genome accession   NZ_CP151951
Coordinates   5585907..5586398 (-) Length   163 a.a.
NCBI ID   WP_013312801.1    Uniprot ID   A0A0M1Q500
Organism   Paenibacillus sp. FSL R10-2782     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5580907..5591398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST83_RS25420 (NST83_25420) opp4C 5581377..5582300 (-) 924 WP_342416126.1 oligopeptide ABC transporter permease -
  NST83_RS25425 (NST83_25425) - 5582313..5583275 (-) 963 WP_342416127.1 ABC transporter permease -
  NST83_RS25430 (NST83_25430) - 5583347..5585080 (-) 1734 WP_342416128.1 ABC transporter substrate-binding protein -
  NST83_RS25435 (NST83_25435) rpsR 5585613..5585885 (-) 273 WP_013312800.1 30S ribosomal protein S18 -
  NST83_RS25440 (NST83_25440) ssbA 5585907..5586398 (-) 492 WP_013312801.1 single-stranded DNA-binding protein Machinery gene
  NST83_RS25445 (NST83_25445) rpsF 5586448..5586732 (-) 285 WP_014278989.1 30S ribosomal protein S6 -
  NST83_RS25450 (NST83_25450) - 5587050..5587244 (+) 195 WP_137060966.1 YjzC family protein -
  NST83_RS25455 (NST83_25455) - 5587611..5587928 (+) 318 WP_342416129.1 hypothetical protein -
  NST83_RS25460 (NST83_25460) - 5588007..5588369 (-) 363 WP_342416130.1 hypothetical protein -
  NST83_RS25465 (NST83_25465) - 5588523..5588753 (+) 231 WP_342416131.1 helix-turn-helix transcriptional regulator -
  NST83_RS25470 (NST83_25470) - 5588922..5589152 (+) 231 WP_134911772.1 helix-turn-helix transcriptional regulator -
  NST83_RS25475 (NST83_25475) - 5589440..5589838 (-) 399 WP_342416132.1 PBECR2 nuclease fold domain-containing protein -
  NST83_RS25485 (NST83_25485) - 5590170..5590394 (-) 225 WP_137060969.1 DUF951 domain-containing protein -
  NST83_RS25490 (NST83_25490) - 5590384..5591334 (-) 951 WP_342416133.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17852.55 Da        Isoelectric Point: 4.8369

>NTDB_id=981891 NST83_RS25440 WP_013312801.1 5585907..5586398(-) (ssbA) [Paenibacillus sp. FSL R10-2782]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNGGGNSGGAAREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=981891 NST83_RS25440 WP_013312801.1 5585907..5586398(-) (ssbA) [Paenibacillus sp. FSL R10-2782]
TTGTTGAACCGTGTCATTTTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTACGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCCTGGAATCTAACCG
CGATGGCGGTAACGGTGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GACGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGACATTTCGGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q500

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.528
  ssb Neisseria meningitidis MC58

35.165

100

0.393
  ssb Neisseria gonorrhoeae MS11

34.078

100

0.374

Multiple sequence alignment