Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | ABXG87_RS09690 | Genome accession | NZ_AP031488 |
| Coordinates | 2037837..2038838 (-) | Length | 333 a.a. |
| NCBI ID | WP_002887068.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius strain NBRC 13956 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2032837..2043838
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABXG87_RS09645 (Ssa13956_18360) | rplP | 2032935..2033348 (-) | 414 | WP_000960950.1 | 50S ribosomal protein L16 | - |
| ABXG87_RS09650 (Ssa13956_18370) | rpsC | 2033352..2034005 (-) | 654 | WP_002885727.1 | 30S ribosomal protein S3 | - |
| ABXG87_RS09655 (Ssa13956_18380) | rplV | 2034018..2034362 (-) | 345 | WP_002887063.1 | 50S ribosomal protein L22 | - |
| ABXG87_RS09660 (Ssa13956_18390) | rpsS | 2034378..2034656 (-) | 279 | WP_000533765.1 | 30S ribosomal protein S19 | - |
| ABXG87_RS09665 (Ssa13956_18400) | rplB | 2034750..2035583 (-) | 834 | WP_002887065.1 | 50S ribosomal protein L2 | - |
| ABXG87_RS09670 (Ssa13956_18410) | - | 2035601..2035897 (-) | 297 | WP_002887066.1 | 50S ribosomal protein L23 | - |
| ABXG87_RS09675 (Ssa13956_18420) | rplD | 2035897..2036520 (-) | 624 | WP_002885795.1 | 50S ribosomal protein L4 | - |
| ABXG87_RS09680 (Ssa13956_18430) | rplC | 2036545..2037171 (-) | 627 | WP_002885755.1 | 50S ribosomal protein L3 | - |
| ABXG87_RS09685 (Ssa13956_18440) | rpsJ | 2037286..2037594 (-) | 309 | WP_002885653.1 | 30S ribosomal protein S10 | - |
| ABXG87_RS09690 (Ssa13956_18450) | ruvB | 2037837..2038838 (-) | 1002 | WP_002887068.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| ABXG87_RS09695 (Ssa13956_18460) | - | 2038973..2039959 (+) | 987 | WP_045769364.1 | IS30 family transposase | - |
| ABXG87_RS09700 (Ssa13956_18470) | - | 2040006..2041829 (-) | 1824 | WP_049553533.1 | acyltransferase family protein | - |
| ABXG87_RS09705 (Ssa13956_18480) | - | 2041826..2042236 (-) | 411 | WP_002885750.1 | membrane protein | - |
| ABXG87_RS09710 (Ssa13956_18490) | - | 2042233..2042667 (-) | 435 | WP_045769362.1 | low molecular weight protein-tyrosine-phosphatase | - |
Sequence
Protein
Download Length: 333 a.a. Molecular weight: 37583.09 Da Isoelectric Point: 4.5040
>NTDB_id=98150 ABXG87_RS09690 WP_002887068.1 2037837..2038838(-) (ruvB) [Streptococcus salivarius strain NBRC 13956]
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLELPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFDMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIID
DKIADKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHMGYDYTQES
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLELPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFDMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIID
DKIADKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHMGYDYTQES
Nucleotide
Download Length: 1002 bp
>NTDB_id=98150 ABXG87_RS09690 WP_002887068.1 2037837..2038838(-) (ruvB) [Streptococcus salivarius strain NBRC 13956]
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAAGAGTATGTTGAGCGTACCCTTCGTCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAAGACCAATTAAAGATTTTTATAGAGGCAGCTAAACTTCGTGATGAAGCCCTAGATC
ATACTCTTTTGTTTGGTCCTCCAGGTTTGGGGAAAACAACTATGGCTTTTGTGATAGCTAATGAGATGGGCGTCAATTTA
AAGCAGACGTCTGGGCCAGCAATTGAAAAGGCTGGTGATTTAGTTGCCATACTCAATGACTTGGAGCCGGGTGATATCTT
ATTTATTGATGAGATTCACCGGATGCCTATGGCAGTTGAAGAAGTTCTTTATAGTGCTATGGAAGATTACTACATCGATA
TCATGATTGGTGCGGGCGAAACAAGTCGTAGTGTCCACCTAGAGTTACCACCGTTCACATTAGTAGGTGCAACTACACGA
GCAGGTATGTTGTCAAATCCATTGAGGGCTCGTTTTGGAATTAATGGTCATATGGAATATTATGAGTTACCAGATTTGAA
GGAAATCATAGAACGTACTTCAGAAATCTTTGACATGACTATAACACCTGAAGCTGCTCTAGAGCTAGCACGTCGTAGCC
GTGGGACGCCTCGTATTGCTAACCGCCTACTTAAGCGCGTGAGAGACTATGCACAAATCATGGGTGATGGCATCATTGAT
GATAAGATTGCAGACAAGGCGTTGACTATGTTGGATGTGGACCATGAAGGACTAGATTATGTCGATCAAAAAATTCTCCG
CACCATGATTGAAATGTATGGTGGGGGACCAGTTGGTCTAGGTACCTTGTCAGTTAATATTGCTGAAGAGCGAGAAACGG
TAGAAGATATGTATGAACCCTATCTAATTCAAAAGGGATTTATTATGCGAACACGAACAGGTCGTGTTGCAACGGTTAAA
GCCTATGAACACATGGGGTACGACTACACTCAAGAAAGTTGA
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAAGAGTATGTTGAGCGTACCCTTCGTCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAAGACCAATTAAAGATTTTTATAGAGGCAGCTAAACTTCGTGATGAAGCCCTAGATC
ATACTCTTTTGTTTGGTCCTCCAGGTTTGGGGAAAACAACTATGGCTTTTGTGATAGCTAATGAGATGGGCGTCAATTTA
AAGCAGACGTCTGGGCCAGCAATTGAAAAGGCTGGTGATTTAGTTGCCATACTCAATGACTTGGAGCCGGGTGATATCTT
ATTTATTGATGAGATTCACCGGATGCCTATGGCAGTTGAAGAAGTTCTTTATAGTGCTATGGAAGATTACTACATCGATA
TCATGATTGGTGCGGGCGAAACAAGTCGTAGTGTCCACCTAGAGTTACCACCGTTCACATTAGTAGGTGCAACTACACGA
GCAGGTATGTTGTCAAATCCATTGAGGGCTCGTTTTGGAATTAATGGTCATATGGAATATTATGAGTTACCAGATTTGAA
GGAAATCATAGAACGTACTTCAGAAATCTTTGACATGACTATAACACCTGAAGCTGCTCTAGAGCTAGCACGTCGTAGCC
GTGGGACGCCTCGTATTGCTAACCGCCTACTTAAGCGCGTGAGAGACTATGCACAAATCATGGGTGATGGCATCATTGAT
GATAAGATTGCAGACAAGGCGTTGACTATGTTGGATGTGGACCATGAAGGACTAGATTATGTCGATCAAAAAATTCTCCG
CACCATGATTGAAATGTATGGTGGGGGACCAGTTGGTCTAGGTACCTTGTCAGTTAATATTGCTGAAGAGCGAGAAACGG
TAGAAGATATGTATGAACCCTATCTAATTCAAAAGGGATTTATTATGCGAACACGAACAGGTCGTGTTGCAACGGTTAAA
GCCTATGAACACATGGGGTACGACTACACTCAAGAAAGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Streptococcus pneumoniae TIGR4 |
86.747 |
99.7 |
0.865 |
| ruvB | Streptococcus pneumoniae R6 |
86.446 |
99.7 |
0.862 |
| ruvB | Streptococcus pneumoniae D39 |
86.446 |
99.7 |
0.862 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
58.204 |
96.997 |
0.565 |
| ruvB | Synechocystis sp. PCC 6803 |
51.118 |
93.994 |
0.48 |
| ruvB | Helicobacter pylori 26695 |
49.844 |
96.396 |
0.48 |