Detailed information NTG0981355

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAFX12_RS02680
• Genome accession: NZ_CP151938
• Coordinates: 548727..549596 (-)
• Length: 289 a.a.
• NCBI ID: WP_064354291.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain TBV025
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 543727..554596

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFX12_RS02645 (AAFX12_02645)	rpsP	544497..544745 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
AAFX12_RS02650 (AAFX12_02650)	rimM	544775..545323 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
AAFX12_RS02655 (AAFX12_02655)	trmD	545351..546112 (+)	762	WP_064354293.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AAFX12_RS02660 (AAFX12_02660)	rplS	546154..546507 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
AAFX12_RS02665 (AAFX12_02665)	yacG	546991..547185 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
AAFX12_RS02670 (AAFX12_02670)	zapD	547344..548084 (-)	741	WP_005373086.1	cell division protein ZapD	-
AAFX12_RS02675 (AAFX12_02675)	coaE	548112..548726 (-)	615	WP_064354292.1	dephospho-CoA kinase	-
AAFX12_RS02680 (AAFX12_02680)	pilD	548727..549596 (-)	870	WP_064354291.1	prepilin peptidase	Machinery gene
AAFX12_RS02685 (AAFX12_02685)	pilC	549661..550884 (-)	1224	WP_064368761.1	type II secretion system F family protein	Machinery gene
AAFX12_RS02690 (AAFX12_02690)	pilB	550908..552593 (-)	1686	WP_005379975.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAFX12_RS02695 (AAFX12_02695)	-	552593..553051 (-)	459	WP_064368760.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AAFX12_RS02700 (AAFX12_02700)	nadC	553313..554200 (-)	888	WP_017820396.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32537.73 Da
• Isoelectric Point: 7.0197

>NTDB_id=981355 AAFX12_RS02680 WP_064354291.1 548727..549596(-) (pilD) [Vibrio alginolyticus strain TBV025]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=981355 AAFX12_RS02680 WP_064354291.1 548727..549596(-) (pilD) [Vibrio alginolyticus strain TBV025]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTAGATACGATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAGGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	52.222	93.426	0.488
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46