Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | AAFX34_RS09625 | Genome accession | NZ_CP151937 |
| Coordinates | 438329..438919 (+) | Length | 196 a.a. |
| NCBI ID | WP_011079353.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain TBV029 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 433329..443919
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX34_RS09610 (AAFX34_09600) | oxyR | 433713..434612 (+) | 900 | WP_011079350.1 | DNA-binding transcriptional regulator OxyR | - |
| AAFX34_RS09615 (AAFX34_09605) | - | 434679..437192 (-) | 2514 | WP_103175341.1 | penicillin-binding protein 1A | - |
| AAFX34_RS09620 (AAFX34_09610) | pilM | 437332..438339 (+) | 1008 | WP_011151279.1 | type IV pilus assembly protein PilM | Machinery gene |
| AAFX34_RS09625 (AAFX34_09615) | pilN | 438329..438919 (+) | 591 | WP_011079353.1 | PilN domain-containing protein | Machinery gene |
| AAFX34_RS09630 (AAFX34_09620) | pilO | 438912..439502 (+) | 591 | WP_011079354.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AAFX34_RS09635 (AAFX34_09625) | pilP | 439492..440004 (+) | 513 | WP_011079355.1 | pilus assembly protein PilP | Machinery gene |
| AAFX34_RS09640 (AAFX34_09630) | pilQ | 440018..441802 (+) | 1785 | WP_011079356.1 | type IV pilus secretin PilQ | Machinery gene |
| AAFX34_RS09645 (AAFX34_09635) | aroK | 442004..442522 (+) | 519 | WP_011079357.1 | shikimate kinase AroK | - |
| AAFX34_RS09650 (AAFX34_09640) | aroB | 442555..443646 (+) | 1092 | WP_061058951.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22672.91 Da Isoelectric Point: 7.6441
>NTDB_id=981307 AAFX34_RS09625 WP_011079353.1 438329..438919(+) (pilN) [Vibrio vulnificus strain TBV029]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
Nucleotide
Download Length: 591 bp
>NTDB_id=981307 AAFX34_RS09625 WP_011079353.1 438329..438919(+) (pilN) [Vibrio vulnificus strain TBV029]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAGATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTTTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAGATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTTTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
67.956 |
92.347 |
0.628 |
| pilN | Vibrio cholerae strain A1552 |
63.277 |
90.306 |
0.571 |