Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   ABXG87_RS06195 Genome accession   NZ_AP031488
Coordinates   1350708..1351379 (+) Length   223 a.a.
NCBI ID   WP_004182732.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345708..1356379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS06165 (Ssa13956_11580) - 1345998..1346267 (-) 270 WP_004182727.1 DUF3165 family protein -
  ABXG87_RS06170 (Ssa13956_11590) typA 1346287..1348137 (-) 1851 WP_002884130.1 translational GTPase TypA -
  ABXG87_RS06175 (Ssa13956_11600) - 1348282..1349250 (-) 969 WP_004182728.1 ROK family glucokinase -
  ABXG87_RS06180 (Ssa13956_11610) - 1349243..1349449 (-) 207 WP_004182729.1 YqgQ family protein -
  ABXG87_RS06185 (Ssa13956_11620) - 1349536..1349988 (-) 453 WP_004182730.1 Fur family transcriptional regulator -
  ABXG87_RS06190 (Ssa13956_11630) - 1350077..1350598 (-) 522 WP_004182731.1 Dps family protein -
  ABXG87_RS06195 cclA/cilC 1350708..1351379 (+) 672 WP_004182732.1 A24 family peptidase Machinery gene
  ABXG87_RS06200 (Ssa13956_11640) - 1351397..1352755 (-) 1359 WP_004182733.1 serine hydrolase -
  ABXG87_RS06205 (Ssa13956_11650) sodA 1352853..1353458 (-) 606 WP_004182735.1 superoxide dismutase SodA -
  ABXG87_RS06210 (Ssa13956_11660) holA 1353554..1354588 (-) 1035 WP_004182736.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25811.24 Da        Isoelectric Point: 8.4714

>NTDB_id=98103 ABXG87_RS06195 WP_004182732.1 1350708..1351379(+) (cclA/cilC) [Streptococcus salivarius strain NBRC 13956]
MLSIIYFFLGASLGSFIGLICDRFPEKSIIFPSSHCSHCKHQLRFFEMIPILSQLFLRSRCRSCQTSIPLRYLFMELFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLKHKSYPLLIWIVGTLPLLFMGNHYLTFTLGLILAIISYIKRLNIGEGDFL
YLASASLIFPLSKTLLIIEIACLLGLAYFLLRRNLKEYIAFVPFLFLGIVLLTFCSIVIEKSR

Nucleotide


Download         Length: 672 bp        

>NTDB_id=98103 ABXG87_RS06195 WP_004182732.1 1350708..1351379(+) (cclA/cilC) [Streptococcus salivarius strain NBRC 13956]
ATGTTAAGTATTATTTATTTTTTTCTGGGAGCCTCTTTAGGTTCATTTATCGGACTGATTTGTGATCGTTTCCCTGAGAA
GTCGATTATTTTTCCTAGTAGTCACTGTAGTCATTGCAAGCATCAGTTGCGTTTTTTCGAGATGATCCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGATCATGTCAGACTTCTATACCTCTTCGTTACCTCTTTATGGAACTATTTTGTGGA
GTAATATGCCTGCTATATTTCTATGACTTTTTGAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCAAT
TTTTGATTTGAAGCATAAATCCTATCCGCTTCTGATTTGGATAGTTGGAACACTCCCGCTCCTATTCATGGGAAACCACT
ATCTCACTTTTACCTTAGGACTCATATTAGCAATTATATCCTATATTAAACGTTTAAACATTGGAGAAGGCGATTTTCTC
TACTTAGCTAGTGCCTCACTTATTTTCCCACTTTCAAAAACACTACTAATTATTGAAATTGCCTGCCTATTAGGACTAGC
TTACTTCCTTCTACGAAGAAATCTCAAGGAATACATCGCATTTGTTCCATTTCTTTTTCTCGGGATAGTACTCCTTACTT
TTTGTTCAATTGTGATAGAAAAAAGCCGATAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae TIGR4

41.589

95.964

0.399
  cclA/cilC Streptococcus mitis SK321

40.183

98.206

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

41.121

95.964

0.395
  cclA/cilC Streptococcus pneumoniae Rx1

40.654

95.964

0.39
  cclA/cilC Streptococcus pneumoniae D39

40.654

95.964

0.39
  cclA/cilC Streptococcus pneumoniae R6

40.654

95.964

0.39

Multiple sequence alignment