Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WLF14_RS27425 Genome accession   NZ_CP151816
Coordinates   6034110..6034625 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas fluorescens strain IMGN2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6029110..6039625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WLF14_RS27400 (WLF14_27400) - 6029310..6030419 (-) 1110 WP_024077668.1 DUF3182 family protein -
  WLF14_RS27405 (WLF14_27405) - 6030591..6031562 (-) 972 WP_342308452.1 GlxA family transcriptional regulator -
  WLF14_RS27410 (WLF14_27410) - 6031659..6032222 (+) 564 WP_024077670.1 cysteine hydrolase family protein -
  WLF14_RS27415 (WLF14_27415) tam 6032246..6033007 (-) 762 WP_342308453.1 trans-aconitate 2-methyltransferase -
  WLF14_RS27420 (WLF14_27420) - 6033125..6034033 (+) 909 WP_277378802.1 LysR family transcriptional regulator -
  WLF14_RS27425 (WLF14_27425) ssb 6034110..6034625 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  WLF14_RS27430 (WLF14_27430) - 6034635..6036029 (-) 1395 WP_024077673.1 MFS transporter -
  WLF14_RS27435 (WLF14_27435) uvrA 6036208..6039042 (+) 2835 WP_069077106.1 excinuclease ABC subunit UvrA -
  WLF14_RS27440 (WLF14_27440) bfr 6039110..6039574 (-) 465 WP_015886133.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=981009 WLF14_RS27425 WP_003232445.1 6034110..6034625(-) (ssb) [Pseudomonas fluorescens strain IMGN2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=981009 WLF14_RS27425 WP_003232445.1 6034110..6034625(-) (ssb) [Pseudomonas fluorescens strain IMGN2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGAAAGGTGGCAGAGATCGCCGGTGAGTACCTGCGCAAAGGCTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGCCCACAGC
AGTCCCGTCCGCAGCCAAGCCAGCAGCCACAACGTGAGTCGCGCCCAGCGCCACAACAGGCCGCTCCGCAACCGGCTCCG
GATTTCGACAGTTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment