Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAFF32_RS17750 Genome accession   NZ_CP151802
Coordinates   3826019..3826525 (-) Length   168 a.a.
NCBI ID   WP_216963235.1    Uniprot ID   A0AAP2HAS4
Organism   Lysobacter sp. FW306-1B-D06B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3821019..3831525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFF32_RS17730 (AAFF32_17730) - 3821980..3822438 (+) 459 WP_216963223.1 glycine zipper 2TM domain-containing protein -
  AAFF32_RS17735 (AAFF32_17735) - 3822526..3823023 (+) 498 WP_216963226.1 DUF6491 family protein -
  AAFF32_RS17740 (AAFF32_17740) - 3823066..3824796 (-) 1731 WP_342315899.1 alpha/beta-hydrolase family protein -
  AAFF32_RS17745 (AAFF32_17745) - 3824983..3825741 (-) 759 WP_342315900.1 DUF4410 domain-containing protein -
  AAFF32_RS17750 (AAFF32_17750) ssb 3826019..3826525 (-) 507 WP_216963235.1 single-stranded DNA-binding protein Machinery gene
  AAFF32_RS17755 (AAFF32_17755) - 3826663..3826977 (-) 315 WP_342315902.1 DUF5076 domain-containing protein -
  AAFF32_RS17760 (AAFF32_17760) - 3826977..3827273 (-) 297 WP_216963241.1 hypothetical protein -
  AAFF32_RS17765 (AAFF32_17765) - 3827427..3828443 (+) 1017 WP_216963244.1 polyprenyl synthetase family protein -
  AAFF32_RS17770 (AAFF32_17770) - 3828642..3829793 (-) 1152 WP_254200536.1 fimbrial protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18294.16 Da        Isoelectric Point: 6.0039

>NTDB_id=980939 AAFF32_RS17750 WP_216963235.1 3826019..3826525(-) (ssb) [Lysobacter sp. FW306-1B-D06B]
MARGINKVILVGNLGDDPETKYTQGGMAVTKARLATTSVRKDRDGNTQERTEWHRVTFFGKLGEIAGEYLRKGSQVYVEG
SIRYDKYTGQDGVERYSTDIIADEMQMLGGRPGEGGGGGSRGEFRGGGDRSERPARAPARQEAAPRREAPPAKSSSFADD
FADDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=980939 AAFF32_RS17750 WP_216963235.1 3826019..3826525(-) (ssb) [Lysobacter sp. FW306-1B-D06B]
ATGGCACGCGGCATCAACAAGGTGATCCTGGTCGGCAATCTTGGCGACGATCCTGAAACCAAGTACACCCAGGGCGGCAT
GGCCGTGACCAAGGCCCGCCTGGCGACGACCAGCGTGCGCAAGGATCGCGACGGCAACACCCAGGAGCGCACCGAGTGGC
ACCGGGTGACCTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCCAGGTGTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGCGCTACTCCACCGACATCATCGCCGACGAGATGCAGAT
GCTCGGCGGACGTCCGGGCGAGGGCGGCGGCGGTGGCAGCCGTGGCGAGTTCCGCGGCGGTGGCGATCGCAGCGAGCGTC
CTGCGCGCGCGCCGGCACGCCAGGAAGCCGCGCCGCGCCGCGAGGCACCGCCGGCCAAGTCGAGCAGTTTCGCCGACGAC
TTCGCGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

46.286

100

0.482
  ssb Vibrio cholerae strain A1552

45.198

100

0.476
  ssb Neisseria gonorrhoeae MS11

45.714

100

0.476
  ssb Glaesserella parasuis strain SC1401

38.743

100

0.44

Multiple sequence alignment