Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAEY27_RS20555 Genome accession   NZ_CP151800
Coordinates   4396340..4396873 (-) Length   177 a.a.
NCBI ID   WP_342322630.1    Uniprot ID   -
Organism   Kosakonia sp. BYX6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4391340..4401873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEY27_RS20525 (AAEY27_20525) - 4391404..4392099 (+) 696 WP_342322624.1 amino acid ABC transporter permease -
  AAEY27_RS20530 (AAEY27_20530) - 4392077..4392844 (+) 768 WP_342322625.1 amino acid ABC transporter ATP-binding protein -
  AAEY27_RS20535 (AAEY27_20535) - 4392870..4393643 (+) 774 WP_342322626.1 amino acid ABC transporter substrate-binding protein -
  AAEY27_RS20540 (AAEY27_20540) - 4393825..4394367 (+) 543 WP_342322627.1 chorismate mutase -
  AAEY27_RS20545 (AAEY27_20545) - 4394501..4395538 (+) 1038 WP_342322628.1 hypothetical protein -
  AAEY27_RS20550 (AAEY27_20550) - 4395517..4396272 (+) 756 WP_342322629.1 hypothetical protein -
  AAEY27_RS20555 (AAEY27_20555) ssb 4396340..4396873 (-) 534 WP_342322630.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AAEY27_RS20560 (AAEY27_20560) uvrA 4397131..4399956 (+) 2826 WP_342322631.1 excinuclease ABC subunit UvrA -
  AAEY27_RS20565 (AAEY27_20565) - 4399957..4400310 (-) 354 WP_342322632.1 MmcQ/YjbR family DNA-binding protein -
  AAEY27_RS20570 (AAEY27_20570) - 4400314..4400730 (-) 417 WP_342322633.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AAEY27_RS20575 (AAEY27_20575) aphA 4400830..4401540 (-) 711 WP_342322634.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19033.96 Da        Isoelectric Point: 5.2456

>NTDB_id=980920 AAEY27_RS20555 WP_342322630.1 4396340..4396873(-) (ssb) [Kosakonia sp. BYX6]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGETKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQGQQQGGWGQPQQPQGNNNQFSGGAQSRPQQQSA
PAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=980920 AAEY27_RS20555 WP_342322630.1 4396340..4396873(-) (ssb) [Kosakonia sp. BYX6]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAACGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCTGAAGTGGCGGGTGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACTGAAGTCGTTGTCAACGTTGG
CGGCACCATGCAAATGCTGGGTGGACGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGGGCCAGCAGCAAGGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCAATAACAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCACAGCAGCAGTCCGCA
CCGGCGCCGTCTAACGAACCGCCGATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.691

100

0.774
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.599
  ssb Neisseria meningitidis MC58

46.927

100

0.475
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.475

Multiple sequence alignment