Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ABXG87_RS02260 Genome accession   NZ_AP031488
Coordinates   434668..435627 (+) Length   319 a.a.
NCBI ID   WP_084871168.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 429668..440627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS02245 (Ssa13956_03820) - 431223..432062 (+) 840 WP_013990143.1 CHAP domain-containing protein -
  ABXG87_RS02250 - 432368..432502 (-) 135 Protein_382 IS110 family transposase -
  ABXG87_RS02255 - 432500..433343 (-) 844 Protein_383 IS3 family transposase -
  ABXG87_RS02260 (Ssa13956_03860) coiA 434668..435627 (+) 960 WP_084871168.1 competence protein CoiA family protein Machinery gene
  ABXG87_RS02265 (Ssa13956_03870) pepF 435638..437443 (+) 1806 WP_353551762.1 oligoendopeptidase F Regulator
  ABXG87_RS02270 (Ssa13956_03880) - 437656..438876 (+) 1221 WP_014633522.1 OFA family MFS transporter -
  ABXG87_RS02275 (Ssa13956_03890) - 438948..439655 (+) 708 WP_002886734.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37844.49 Da        Isoelectric Point: 9.0170

>NTDB_id=98068 ABXG87_RS02260 WP_084871168.1 434668..435627(+) (coiA) [Streptococcus salivarius strain NBRC 13956]
MLIAKNQEGNLVSALETSLQRKESYSCPGCQGVVLLRHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVSIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWPLTENLMTVLRFPYQAEQVETYQVTQRKRVSHVIQRELMGKNPRW
MRRQEEAYLNGMNLLCLSDQDFSPQVRFPESKQGFVQIRQSLEGFEKLFMQYYRKRHFSYRQTLYPPTFYAKIVKNRYN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=98068 ABXG87_RS02260 WP_084871168.1 434668..435627(+) (coiA) [Streptococcus salivarius strain NBRC 13956]
ATGTTAATTGCAAAAAATCAGGAGGGAAACCTCGTTTCAGCTCTAGAAACCAGTTTGCAACGTAAGGAATCCTATAGCTG
TCCTGGTTGCCAGGGAGTTGTCCTTCTGAGACATGGCCAGGTAATGTGTCCACATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCCCAACATTTATCTCTTAAGGCAGCTTTGTATAAATCTTTGGTTAATCATGGT
GAAAAAGTAAGTATTGAAAAAGTTTTGTCTGAGATGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTAGA
AGTTCAGTGTTCTCGGTTATCCCAGCAACGTTTGAGAGAGAGGACATGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGTCGTCTAACAGACCTACAGCGGGACTTTCTCTATTTTACGGCTAAGATT
GGATTTCACCTATGGGAGCTTGATTGGAAGCGTGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCTTGGCCGTTAACCGAAAATCTCATGACAGTTCTACGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTATCAAGTAACTCAGCGAAAGAGGGTCTCACATGTGATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAGAAGCCTATCTTAATGGAATGAATTTATTATGCCTGTCTGATCAGGATTTTTCCCCACAAGTAAG
ATTTCCTGAATCTAAGCAGGGCTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTATGCAATATTATC
GAAAAAGGCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGATACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.016

97.492

0.439
  coiA Streptococcus pneumoniae Rx1

45.016

97.492

0.439
  coiA Streptococcus pneumoniae D39

45.016

97.492

0.439
  coiA Streptococcus pneumoniae R6

45.016

97.492

0.439
  coiA Streptococcus mitis NCTC 12261

45.016

97.492

0.439
  coiA Lactococcus lactis subsp. cremoris KW2

36.061

100

0.373

Multiple sequence alignment