Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ABXG87_RS01830 Genome accession   NZ_AP031488
Coordinates   350677..351339 (+) Length   220 a.a.
NCBI ID   WP_353551724.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345677..356339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS01805 (Ssa13956_03040) - 345984..346694 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  ABXG87_RS01810 (Ssa13956_03050) - 346829..347488 (+) 660 WP_002886636.1 CBS and ACT domain-containing protein -
  ABXG87_RS01815 (Ssa13956_03060) cysK 347668..348594 (-) 927 WP_002883742.1 cysteine synthase A -
  ABXG87_RS01820 (Ssa13956_03070) - 348696..349322 (-) 627 WP_045768752.1 YigZ family protein -
  ABXG87_RS01825 (Ssa13956_03080) comFA/cflA 349377..350696 (+) 1320 WP_045768751.1 DEAD/DEAH box helicase Machinery gene
  ABXG87_RS01830 (Ssa13956_03090) comFC/cflB 350677..351339 (+) 663 WP_353551724.1 ComF family protein Machinery gene
  ABXG87_RS01835 (Ssa13956_03100) raiA 351418..351966 (+) 549 WP_002883786.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26045.34 Da        Isoelectric Point: 8.6075

>NTDB_id=98062 ABXG87_RS01830 WP_353551724.1 350677..351339(+) (comFC/cflB) [Streptococcus salivarius strain NBRC 13956]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRETCIDCELWMKKGYIPKHLAIYRYKE
NMKDYFSRYKFMGDYCLRKLFQQDIKNNLKPFLTKGFTIVLVPLSEERLAERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTRKERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYQMVQLLEGIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=98062 ABXG87_RS01830 WP_353551724.1 350677..351339(+) (comFC/cflB) [Streptococcus salivarius strain NBRC 13956]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAGAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGAGACCTGTATTGATTGTGAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATAAAGAA
AACATGAAAGATTATTTTAGCCGATATAAATTTATGGGAGACTATTGTCTTAGAAAATTATTTCAACAAGATATAAAAAA
TAACTTAAAACCATTTTTGACGAAAGGTTTTACCATAGTGCTGGTCCCATTATCGGAAGAACGCTTGGCAGAAAGAGGAT
TTAACCAAGTTGAGGGATTGATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGCAAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGACGATATCTATACAACAGGATCTACTTTATATCAGATGGTTCAACTATTAGAAGGTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45

Multiple sequence alignment