Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ABXG87_RS00350 Genome accession   NZ_AP031488
Coordinates   60090..60680 (+) Length   196 a.a.
NCBI ID   WP_002886323.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55090..65680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS00325 (Ssa13956_00430) - 56214..56669 (-) 456 WP_353551627.1 DUF3021 domain-containing protein -
  ABXG87_RS00330 (Ssa13956_00440) - 56666..57103 (-) 438 WP_045772361.1 LytTR family DNA-binding domain-containing protein -
  ABXG87_RS00335 - 57282..57587 (+) 306 WP_002886319.1 hypothetical protein -
  ABXG87_RS00340 (Ssa13956_00450) hexB 57637..59580 (+) 1944 WP_353551629.1 DNA mismatch repair endonuclease MutL Machinery gene
  ABXG87_RS00345 (Ssa13956_00460) - 59711..59932 (+) 222 WP_002886321.1 hypothetical protein -
  ABXG87_RS00350 (Ssa13956_00470) ruvA 60090..60680 (+) 591 WP_002886323.1 Holliday junction branch migration protein RuvA Machinery gene
  ABXG87_RS00355 (Ssa13956_00480) - 60689..61243 (+) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  ABXG87_RS00360 (Ssa13956_00490) cinA 61340..62608 (+) 1269 WP_353551631.1 competence/damage-inducible protein A Machinery gene
  ABXG87_RS00365 (Ssa13956_00500) recA 62644..63783 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  ABXG87_RS00370 (Ssa13956_00510) spx 63950..64348 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21728.12 Da        Isoelectric Point: 5.6710

>NTDB_id=98044 ABXG87_RS00350 WP_002886323.1 60090..60680(+) (ruvA) [Streptococcus salivarius strain NBRC 13956]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNHQLDEAMEALI
ALGYKATELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=98044 ABXG87_RS00350 WP_002886323.1 60090..60680(+) (ruvA) [Streptococcus salivarius strain NBRC 13956]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTAGCGAATCCATATAGTTTTTCTGACCAAATGAATCAGACTATCCAAGTCTATCTTCATCAGGTTATTAGAG
ACGATGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCCCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCTGTTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAACAAATGGTTCTGGATTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACGACACCAAGTCAACCTGAAGGGAATCATCAATTGGATGAGGCTATGGAAGCCTTGATT
GCTCTTGGTTATAAAGCCACAGAACTTAAGAAAATCAAGGCCTTCTTCGAAGGAACTAATGAAACGGCAGAGCAATACAT
TAAATCGGCTCTTAAAATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.663
  ruvA Streptococcus pneumoniae R6

65

100

0.663
  ruvA Streptococcus pneumoniae D39

65

100

0.663
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.423

Multiple sequence alignment