Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ/pilQ   Type   Machinery gene
Locus tag   ABXH21_RS02645 Genome accession   NZ_AP031472
Coordinates   578481..580817 (+) Length   778 a.a.
NCBI ID   WP_353551969.1    Uniprot ID   -
Organism   Moraxella osloensis strain NBRC 115781     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 573481..585817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH21_RS02625 (SKB0120_05050) pilM 575456..576508 (+) 1053 WP_065253720.1 pilus assembly protein PilM Machinery gene
  ABXH21_RS02630 (SKB0120_05060) pilN 576508..577179 (+) 672 WP_050324001.1 PilN domain-containing protein Machinery gene
  ABXH21_RS02635 (SKB0120_05070) pilO 577236..577940 (+) 705 WP_138019479.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABXH21_RS02640 (SKB0120_05080) comL/pilP 577930..578463 (+) 534 WP_203171548.1 pilus assembly protein PilP Machinery gene
  ABXH21_RS02645 (SKB0120_05090) comQ/pilQ 578481..580817 (+) 2337 WP_353551969.1 type IV pilus secretin PilQ Machinery gene
  ABXH21_RS02650 (SKB0120_05100) - 580925..581461 (+) 537 WP_353551970.1 shikimate kinase -
  ABXH21_RS02655 (SKB0120_05110) aroB 581530..582627 (+) 1098 WP_353551971.1 3-dehydroquinate synthase -
  ABXH21_RS02660 (SKB0120_05120) - 582697..583680 (+) 984 WP_353551972.1 hypothetical protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 83141.70 Da        Isoelectric Point: 7.0476

>NTDB_id=98007 ABXH21_RS02645 WP_353551969.1 578481..580817(+) (comQ/pilQ) [Moraxella osloensis strain NBRC 115781]
MNFNAYPFRTSTSKLAVAMSAMLVSSSVFAADTIRNISVTTPSAMLTELNIDFANSAVTPTAYELASPTRLVLDFPNVNN
QIASRMQTYNQGYVKNITTLTNDSMTRMIIELSNQATFSTRVINNRLVVSMQPKTTAATNPAIVKPVVTTAAVVSQPAVV
TPAAVVTEPVPAPVIATPPPVVVQTPPPVAVVTQTPKAAPPANTMVVKVNPLLNPAAAVVQQYNYDGLAAINFNGTSNGG
GNISVNLVNDSIPVDVQRMGDELVIRLTGATIPSRLQKQMTVGNGLVRDVIATNQGRNGVIRIAMTGDYDYKAFQTGNQL
NINIDPPKRLREPTLEERTYSGAPLSLEFQDVSVRTILEVLAQHTNTNIVASDSVSGNITLRLINVPWDQALDIILKSKN
LDKRVNGNVIWVAPAAELAKQEADELKAQQEKKVLDPLRTEYIRLNYAKAENVRTLIEAGRATSDRSSGNTSLLTDRGTV
TIDARTNTLIVKDTAETISNIRDLISKIDIAVKQVMIEARIVSATDTFSKELGVKWGILSQGAASNRNLLVGGNLSTIDS
LKTYTTATNSDGTTYPVYSGITAANNLSVNLGAANPAGSIAFGLLSISDLLLDLELSAMQADNKGEVISSPKVLTADKQT
ARIMSGTQIPYQEASASGATSTSFIEAALSLEVTPNITPEGRIGMDLSIENGSPTIINGATAVSKDSIKTNVVVDDGQTV
VLGGVFKNTLGNDVTKIPFLGDLPYVDRFFKRTSKTNNKQELLIFVTPKLVNDTGRVN

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=98007 ABXH21_RS02645 WP_353551969.1 578481..580817(+) (comQ/pilQ) [Moraxella osloensis strain NBRC 115781]
ATGAATTTTAATGCCTATCCATTTCGAACTTCAACGTCTAAGCTAGCGGTAGCGATGAGTGCGATGTTAGTATCTAGCAG
CGTGTTTGCAGCTGATACGATTAGAAATATCTCGGTTACCACGCCGAGCGCTATGTTAACAGAACTCAATATCGACTTTG
CTAATAGTGCTGTGACCCCGACGGCTTATGAACTTGCTTCACCCACACGATTGGTGTTGGATTTCCCCAATGTGAATAAT
CAAATTGCATCACGGATGCAAACTTATAACCAAGGCTATGTCAAAAATATCACCACGCTGACCAATGACAGTATGACACG
TATGATTATTGAGTTGTCAAATCAAGCGACCTTTAGTACACGTGTGATTAATAATCGCCTGGTAGTATCAATGCAGCCGA
AAACCACAGCAGCTACCAATCCAGCTATCGTTAAACCTGTGGTGACTACAGCGGCCGTTGTGAGTCAGCCCGCGGTGGTA
ACGCCTGCTGCCGTAGTGACTGAACCTGTTCCTGCCCCTGTGATTGCTACACCGCCACCTGTGGTCGTGCAAACGCCGCC
ACCTGTTGCCGTCGTGACCCAAACACCAAAAGCCGCCCCACCCGCCAATACCATGGTAGTCAAAGTCAATCCTTTATTAA
ATCCTGCTGCCGCGGTTGTTCAACAATATAACTATGATGGTCTAGCGGCGATTAATTTTAATGGTACCTCGAACGGCGGC
GGTAATATTAGCGTTAATTTGGTAAATGACAGCATTCCTGTGGATGTACAGCGCATGGGCGATGAGTTAGTCATTCGTCT
GACAGGCGCCACCATTCCAAGTCGCCTACAAAAACAAATGACCGTAGGTAATGGCTTGGTGCGTGATGTTATCGCAACAA
ACCAAGGACGCAATGGCGTGATTCGCATTGCCATGACAGGCGATTATGACTATAAAGCCTTTCAAACAGGCAATCAGCTA
AATATCAATATCGATCCCCCCAAACGTCTGCGCGAGCCGACCCTTGAGGAGCGTACCTATAGTGGGGCGCCTTTATCACT
AGAGTTTCAAGATGTCAGCGTGCGTACGATTTTAGAAGTGTTGGCACAACATACCAATACCAATATTGTTGCCAGTGACA
GCGTCAGTGGTAATATTACCTTGCGTCTGATTAACGTGCCTTGGGATCAAGCCCTAGATATTATCCTAAAAAGTAAAAAT
TTGGATAAACGGGTTAATGGTAATGTAATTTGGGTGGCACCCGCGGCAGAACTTGCCAAACAAGAAGCCGATGAATTAAA
AGCGCAACAAGAGAAAAAAGTATTAGACCCACTGCGTACCGAATATATCCGACTTAACTATGCCAAAGCAGAAAATGTAC
GAACATTGATTGAAGCAGGCAGAGCAACATCCGATCGTTCGAGCGGCAATACCTCACTGTTAACAGACAGAGGTACAGTC
ACAATCGATGCCAGAACCAATACCTTGATTGTTAAAGATACCGCTGAAACCATCAGCAACATCCGTGATTTGATTAGTAA
AATCGATATCGCTGTCAAACAAGTGATGATTGAAGCCCGTATTGTGAGTGCGACAGACACCTTTAGTAAAGAACTTGGGG
TAAAATGGGGCATTTTATCACAAGGCGCGGCAAGTAATCGTAACCTGCTGGTGGGCGGTAATTTAAGTACCATTGATAGC
CTTAAGACTTATACCACAGCTACAAATTCAGACGGTACTACCTATCCAGTCTATAGCGGTATCACTGCCGCTAATAACCT
CAGTGTCAATCTAGGTGCAGCTAACCCTGCAGGCTCGATTGCCTTTGGCTTGTTGAGCATTTCAGATTTACTATTAGATT
TAGAATTGTCAGCCATGCAAGCGGATAACAAAGGTGAAGTCATCTCTAGTCCAAAGGTGCTAACCGCCGACAAACAAACC
GCCAGAATCATGTCAGGCACACAAATCCCTTATCAAGAAGCCTCTGCCAGTGGGGCGACTTCAACGAGCTTTATCGAAGC
GGCATTGAGTCTTGAAGTGACCCCTAATATTACCCCTGAAGGTCGTATTGGCATGGATTTGAGTATTGAAAATGGTTCAC
CAACCATCATCAATGGCGCGACAGCGGTTTCTAAAGATTCGATTAAAACCAACGTGGTCGTCGATGATGGTCAAACGGTT
GTGCTCGGTGGCGTGTTTAAAAATACCTTAGGTAATGATGTGACTAAAATACCTTTCTTGGGGGATTTACCTTATGTTGA
TCGCTTCTTTAAACGCACCTCAAAAACCAACAATAAGCAAGAATTATTGATTTTTGTGACCCCAAAATTGGTGAATGACA
CGGGCCGTGTTAATTAA

Domains

Predicted by InterProScan.

Secretin and TonB N terminus short domain (STN)

(368-414)

Bacterial type II/III secretion system short domain (Secretin_N)

(441-514)

Bacterial type II and III secretion system protein (Secretin)

(618-771)

AMIN domain (AMIN)

(48-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ/pilQ Acinetobacter baylyi ADP1

50.166

77.378

0.388
  pilQ Acinetobacter baumannii strain A118

49.508

78.406

0.388
  pilQ Acinetobacter baumannii D1279779

49.508

78.406

0.388