Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABXH21_RS02635 Genome accession   NZ_AP031472
Coordinates   577236..577940 (+) Length   234 a.a.
NCBI ID   WP_138019479.1    Uniprot ID   -
Organism   Moraxella osloensis strain NBRC 115781     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 572236..582940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH21_RS02620 (SKB0120_05040) - 572525..575254 (-) 2730 WP_353551966.1 transglycosylase domain-containing protein -
  ABXH21_RS02625 (SKB0120_05050) pilM 575456..576508 (+) 1053 WP_065253720.1 pilus assembly protein PilM Machinery gene
  ABXH21_RS02630 (SKB0120_05060) pilN 576508..577179 (+) 672 WP_050324001.1 PilN domain-containing protein Machinery gene
  ABXH21_RS02635 (SKB0120_05070) pilO 577236..577940 (+) 705 WP_138019479.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABXH21_RS02640 (SKB0120_05080) comL/pilP 577930..578463 (+) 534 WP_203171548.1 pilus assembly protein PilP Machinery gene
  ABXH21_RS02645 (SKB0120_05090) comQ/pilQ 578481..580817 (+) 2337 WP_353551969.1 type IV pilus secretin PilQ Machinery gene
  ABXH21_RS02650 (SKB0120_05100) - 580925..581461 (+) 537 WP_353551970.1 shikimate kinase -
  ABXH21_RS02655 (SKB0120_05110) aroB 581530..582627 (+) 1098 WP_353551971.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26498.12 Da        Isoelectric Point: 5.8146

>NTDB_id=98005 ABXH21_RS02635 WP_138019479.1 577236..577940(+) (pilO) [Moraxella osloensis strain NBRC 115781]
MTAKKSFDVKAFTESFKSLDQNNYGSWPVPVKVTVLLFMVAVIAFLTWFLPISTKRDEIAAAEAEQQTLLDEYRQKESKA
RHLKEYQAQVSKMQSDFKELLNQLPKDTRISDLVDGINMVGVGSNVKFQDIKVEPEVSQEFFIEQPIRIAALGDYHQFGS
FISGLAKLPRIITLHDFEVTNPSPSLDKLPETNLVLNVKTYRSKELTEEELKKAQKDNQKNPAGSDNKEANNGN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=98005 ABXH21_RS02635 WP_138019479.1 577236..577940(+) (pilO) [Moraxella osloensis strain NBRC 115781]
ATTACCGCAAAAAAATCGTTTGATGTTAAAGCCTTTACCGAAAGCTTTAAATCCCTGGACCAAAATAATTATGGTAGCTG
GCCTGTGCCTGTTAAGGTTACCGTATTGCTATTTATGGTTGCTGTTATCGCCTTTTTAACTTGGTTTTTGCCGATTAGTA
CCAAACGTGATGAGATTGCCGCTGCCGAAGCCGAGCAGCAAACCTTGTTAGATGAATATCGCCAAAAAGAATCCAAAGCA
CGTCATCTAAAAGAATATCAGGCGCAAGTATCAAAAATGCAGTCTGATTTTAAAGAACTGCTCAATCAATTACCCAAAGA
CACCCGTATTTCTGACTTGGTGGATGGAATTAATATGGTTGGTGTGGGCAGTAATGTCAAATTTCAGGATATTAAAGTTG
AACCCGAAGTCTCCCAAGAATTCTTTATTGAGCAGCCAATTCGTATTGCCGCTTTAGGAGATTATCACCAATTTGGCTCA
TTCATTAGTGGTCTAGCTAAACTACCTCGGATTATTACCCTGCATGACTTTGAGGTCACCAACCCTAGTCCTAGCCTAGA
CAAGCTACCAGAAACCAATCTTGTTTTGAACGTTAAAACTTATCGTTCAAAAGAGTTAACTGAAGAAGAATTGAAAAAAG
CACAAAAAGATAATCAAAAAAATCCAGCTGGGTCTGACAATAAGGAAGCGAATAATGGCAATTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(60-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

48.02

86.325

0.415
  comO/pilO Acinetobacter baylyi ADP1

47.5

85.47

0.406

Multiple sequence alignment