Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   AAFA20_RS03890 Genome accession   NZ_CP151692
Coordinates   813673..814710 (-) Length   345 a.a.
NCBI ID   WP_000355489.1    Uniprot ID   A0A009PTR1
Organism   Acinetobacter baumannii strain F19-10-CH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 797187..839403 813673..814710 within 0


Gene organization within MGE regions


Location: 797187..839403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA20_RS03805 (AAFA20_03805) - 798020..799066 (-) 1047 WP_001181640.1 hypothetical protein -
  AAFA20_RS03810 (AAFA20_03810) - 799082..800008 (-) 927 WP_000100974.1 acyltransferase -
  AAFA20_RS03815 (AAFA20_03815) - 800253..800906 (+) 654 WP_001202415.1 OmpA family protein -
  AAFA20_RS03820 (AAFA20_03820) rep 801100..803139 (+) 2040 WP_000093035.1 DNA helicase Rep -
  AAFA20_RS03825 (AAFA20_03825) dut 803163..803615 (+) 453 WP_000868152.1 dUTP diphosphatase -
  AAFA20_RS03830 (AAFA20_03830) - 803815..804228 (+) 414 Protein_734 phosphomannomutase/phosphoglucomutase -
  AAFA20_RS03840 (AAFA20_03840) - 805424..806422 (+) 999 Protein_736 phosphomannomutase/phosphoglucomutase -
  AAFA20_RS03845 (AAFA20_03845) argB 806437..807345 (+) 909 WP_001135419.1 acetylglutamate kinase -
  AAFA20_RS03850 (AAFA20_03850) - 807466..808248 (+) 783 WP_000890283.1 GNAT family N-acetyltransferase -
  AAFA20_RS03855 (AAFA20_03855) - 808357..809205 (+) 849 WP_000336554.1 class II glutamine amidotransferase -
  AAFA20_RS03860 (AAFA20_03860) - 809457..809912 (+) 456 WP_000782976.1 bacteriohemerythrin -
  AAFA20_RS03865 (AAFA20_03865) - 810065..811132 (+) 1068 WP_004736014.1 hypothetical protein -
  AAFA20_RS03870 (AAFA20_03870) - 811132..811455 (+) 324 WP_000442582.1 RnfH family protein -
  AAFA20_RS03875 (AAFA20_03875) bamE 811510..811908 (-) 399 WP_001170993.1 outer membrane protein assembly factor BamE -
  AAFA20_RS03880 (AAFA20_03880) fur 812020..812457 (+) 438 WP_001122847.1 ferric iron uptake transcriptional regulator -
  AAFA20_RS03885 (AAFA20_03885) pilU 812527..813645 (-) 1119 WP_000347039.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AAFA20_RS03890 (AAFA20_03890) pilT 813673..814710 (-) 1038 WP_000355489.1 type IV pilus twitching motility protein PilT Machinery gene
  AAFA20_RS03895 (AAFA20_03895) - 814837..815529 (+) 693 WP_001108513.1 YggS family pyridoxal phosphate-dependent enzyme -
  AAFA20_RS03900 (AAFA20_03900) - 815730..819326 (-) 3597 WP_000698789.1 AAA family ATPase -
  AAFA20_RS03905 (AAFA20_03905) - 819336..820604 (-) 1269 WP_002011272.1 exonuclease SbcCD subunit D -
  AAFA20_RS03910 (AAFA20_03910) - 820768..821241 (+) 474 WP_000974355.1 OsmC family protein -
  AAFA20_RS03915 (AAFA20_03915) - 821309..821686 (-) 378 WP_001059437.1 VOC family protein -
  AAFA20_RS03920 (AAFA20_03920) - 822066..822518 (+) 453 WP_000164152.1 ABZJ_00895 family protein -
  AAFA20_RS03925 (AAFA20_03925) - 822607..823512 (+) 906 WP_001039352.1 TIGR01777 family oxidoreductase -
  AAFA20_RS03930 (AAFA20_03930) - 823504..824619 (-) 1116 WP_000546685.1 FAD-dependent oxidoreductase -
  AAFA20_RS03935 (AAFA20_03935) hemB 824645..825658 (-) 1014 WP_000222569.1 porphobilinogen synthase -
  AAFA20_RS03940 (AAFA20_03940) - 825801..826298 (+) 498 WP_002156418.1 thioesterase family protein -
  AAFA20_RS03945 (AAFA20_03945) - 826568..827719 (+) 1152 WP_000128703.1 EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit -
  AAFA20_RS03950 (AAFA20_03950) - 827726..829249 (+) 1524 WP_000857095.1 DHA2 family efflux MFS transporter permease subunit -
  AAFA20_RS03955 (AAFA20_03955) ggt 829554..831539 (+) 1986 WP_001042938.1 gamma-glutamyltransferase -
  AAFA20_RS03965 (AAFA20_03965) - 832235..833392 (+) 1158 WP_000947475.1 site-specific integrase -
  AAFA20_RS03970 (AAFA20_03970) - 833389..834273 (+) 885 WP_114226310.1 endonuclease/exonuclease/phosphatase family protein -
  AAFA20_RS03975 (AAFA20_03975) - 834264..834719 (+) 456 WP_000549863.1 hypothetical protein -
  AAFA20_RS03980 (AAFA20_03980) - 834834..835826 (+) 993 WP_000527288.1 FRG domain-containing protein -
  AAFA20_RS03985 (AAFA20_03985) - 835833..836003 (-) 171 WP_000119264.1 hypothetical protein -
  AAFA20_RS03990 (AAFA20_03990) - 836004..836219 (-) 216 WP_039200279.1 hypothetical protein -
  AAFA20_RS03995 (AAFA20_03995) - 836216..836425 (-) 210 WP_114226311.1 hypothetical protein -
  AAFA20_RS04000 (AAFA20_04000) - 836422..836871 (-) 450 WP_114226312.1 DUF551 domain-containing protein -
  AAFA20_RS04005 (AAFA20_04005) - 836875..837120 (-) 246 WP_000654847.1 hypothetical protein -
  AAFA20_RS04010 (AAFA20_04010) - 837122..838084 (-) 963 WP_114229871.1 hypothetical protein -
  AAFA20_RS04015 (AAFA20_04015) - 838099..838866 (-) 768 WP_002010120.1 hypothetical protein -
  AAFA20_RS04020 (AAFA20_04020) - 838878..839201 (-) 324 WP_000181042.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38312.92 Da        Isoelectric Point: 6.7271

>NTDB_id=979937 AAFA20_RS03890 WP_000355489.1 813673..814710(-) (pilT) [Acinetobacter baumannii strain F19-10-CH6]
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALEHKDVHRLVYDIMNDKQRRDYEEKLETDFSFEVPNVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGQIFKDICDYPRGIVLVTGPTGSGKSTTLAAMLDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANHGMTTLDQSL
KGLVARGVISPQTARTAAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=979937 AAFA20_RS03890 WP_000355489.1 813673..814710(-) (pilT) [Acinetobacter baumannii strain F19-10-CH6]
ATGGATATTACAGAGCTACTCGCCTTCTCTGTGAAAAATGGCGCGTCCGATTTACATCTCTCTGCTGGCATGCCACCAAT
GATTCGTGTTGACGGTGAAGTTCGTCGTATTAACTTACCAGCCTTAGAACATAAAGATGTCCACCGTCTTGTTTACGACA
TCATGAATGATAAACAGCGCCGTGACTATGAAGAAAAACTCGAAACTGACTTTTCTTTTGAAGTACCTAACGTTGCGCGT
TTCCGTGTTAACGCATTTAACCAAAACCGTGGTGCTGGTGCAGTATTTCGTACTATTCCATCTAAAGTCCTCACCATGGA
AGATCTAGGTCTAGGGCAAATCTTTAAAGATATTTGCGACTATCCTCGCGGCATTGTACTGGTGACGGGACCAACAGGTT
CGGGTAAATCAACTACGCTTGCAGCGATGCTCGATTATATTAACGAAAACCGCTATGACCATATTTTAACGGTGGAAGAT
CCAATCGAATTTGTACACCAGTCTAAGAAATGTCTCATTAACCAGCGTGAAGTGCATCGTGACACACACGGCTTTAATGA
AGCACTTCGCTCAGCACTGCGTGAAGACCCAGATATTATTTTAGTCGGTGAGATGCGTGACCTTGAAACTATTCGCTTGG
CATTAACCGCTGCCGAAACAGGTCACTTGGTGTTTGGTACACTCCACACCACGTCGGCAGCAAAAACCATTGACCGTGTG
ATTGACGTATTCCCTGCCGAAGAAAAAGACATGGTTCGTGCCATGCTGTCAGAATCTTTACAAGCGGTTATTTCACAAAC
CCTGCTTAAAAAGAATGGTGGTGGCCGTGTCGCAGCGCATGAGATCATGATTGGTATTCCGGCTATTCGTAACTTAATTC
GTGAAAACAAAGTCGCGCAAATGTACTCAGCCATTCAAACTGGTGCCAATCATGGCATGACCACACTAGACCAAAGCTTA
AAAGGCTTAGTCGCTCGCGGTGTGATTAGTCCACAAACCGCACGTACTGCGGCAAAACAGCCTGAATCATTCCTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PTR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii strain A118

100

100

1
  pilT Acinetobacter baumannii D1279779

100

100

1
  pilT Acinetobacter nosocomialis M2

99.71

100

0.997
  pilT Acinetobacter baylyi ADP1

88.953

99.71

0.887
  pilT Pseudomonas aeruginosa PAK

84.302

99.71

0.841
  pilT Pseudomonas stutzeri DSM 10701

84.012

99.71

0.838
  pilT Legionella pneumophila strain Lp02

75.581

99.71

0.754
  pilT Legionella pneumophila strain ERS1305867

75.581

99.71

0.754
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.726

97.391

0.699
  pilT Vibrio cholerae strain A1552

71.726

97.391

0.699
  pilT Neisseria meningitidis 8013

68.116

100

0.681
  pilT Neisseria gonorrhoeae MS11

67.826

100

0.678
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.174

100

0.522
  pilU Vibrio cholerae strain A1552

41.593

98.261

0.409
  pilU Pseudomonas stutzeri DSM 10701

40.597

97.101

0.394
  pilU Acinetobacter baylyi ADP1

38.728

100

0.388

Multiple sequence alignment