Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AAE282_RS13400 Genome accession   NZ_CP151685
Coordinates   2557273..2557569 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain YB-187     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2552273..2562569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAE282_RS13355 (AAE282_13355) tasA 2552681..2553466 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  AAE282_RS13360 (AAE282_13360) sipW 2553530..2554102 (-) 573 WP_003246088.1 signal peptidase I -
  AAE282_RS13365 (AAE282_13365) tapA 2554086..2554847 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  AAE282_RS13370 (AAE282_13370) yqzG 2555119..2555445 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  AAE282_RS13375 (AAE282_13375) spoIIT 2555487..2555666 (-) 180 WP_003230176.1 YqzE family protein -
  AAE282_RS13380 (AAE282_13380) comGG 2555737..2556111 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  AAE282_RS13385 (AAE282_13385) comGF 2556112..2556495 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  AAE282_RS13390 (AAE282_13390) comGE 2556521..2556868 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  AAE282_RS13395 (AAE282_13395) comGD 2556852..2557283 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  AAE282_RS13400 (AAE282_13400) comGC 2557273..2557569 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  AAE282_RS13405 (AAE282_13405) comGB 2557583..2558620 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  AAE282_RS13410 (AAE282_13410) comGA 2558607..2559677 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  AAE282_RS13415 (AAE282_13415) corA 2560089..2561042 (-) 954 WP_004399136.1 magnesium transporter CorA -
  AAE282_RS13420 (AAE282_13420) yqhB 2561185..2562513 (+) 1329 WP_009967730.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=979778 AAE282_RS13400 WP_003230162.1 2557273..2557569(-) (comGC) [Bacillus subtilis strain YB-187]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=979778 AAE282_RS13400 WP_003230162.1 2557273..2557569(-) (comGC) [Bacillus subtilis strain YB-187]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment