Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AADZ70_RS08635 Genome accession   NZ_CP151679
Coordinates   1732769..1733521 (-) Length   250 a.a.
NCBI ID   WP_342007990.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1727769..1738521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS08610 (AADZ70_08610) mreC 1728202..1729065 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  AADZ70_RS08615 (AADZ70_08615) mreB 1729096..1730109 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  AADZ70_RS08620 (AADZ70_08620) radC 1730201..1730896 (-) 696 WP_016938780.1 DNA repair protein RadC -
  AADZ70_RS08625 (AADZ70_08625) - 1730928..1731497 (-) 570 WP_342007988.1 Maf family protein -
  AADZ70_RS08630 (AADZ70_08630) - 1731641..1732642 (-) 1002 WP_342007989.1 SPOR domain-containing protein -
  AADZ70_RS08635 (AADZ70_08635) comC 1732769..1733521 (-) 753 WP_342007990.1 prepilin peptidase Machinery gene
  AADZ70_RS08640 (AADZ70_08640) - 1733661..1734953 (-) 1293 WP_342007991.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AADZ70_RS08645 (AADZ70_08645) - 1735012..1737654 (-) 2643 WP_016938775.1 valine--tRNA ligase -
  AADZ70_RS08650 (AADZ70_08650) - 1738107..1738298 (+) 192 WP_016938774.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26871.44 Da        Isoelectric Point: 8.8953

>NTDB_id=979693 AADZ70_RS08635 WP_342007990.1 1732769..1733521(-) (comC) [Bacillus sp. YBsi01]
MLFILFVLGLIFGSFFYTVACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYILQRGRCRHCRTKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLIALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRIFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYLYGEELFA
FYITLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=979693 AADZ70_RS08635 WP_342007990.1 1732769..1733521(-) (comC) [Bacillus sp. YBsi01]
GTGCTTTTCATTCTGTTTGTTCTCGGTCTGATTTTCGGTTCTTTTTTTTATACAGTCGCATGCCGTATTCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTTGTTTCCT
ATATCCTGCAAAGAGGAAGGTGCAGACACTGCCGTACGAAGCTGTCAGTGATGTATCCGGCAGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCCGGTATCCATTTCGGTTTCTCAAAAGAGCTGCTAATCGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATTTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAGCTGTTTGGAGTGATCGGGCTTGCGCTCGGTGTGAAGCT
CGTCCTTATTGCATTCTTTCTTTCCGTTATAATCGGAGCCGTATACGGTATGTGCGCCGCAGCGGGGGGCAGGCTTGGTA
AAAAGCAGCCTTTCCCGTTTGCGCCGGCCATCGCAGCCGGGAGCGCTGTGAGTTACTTATACGGTGAAGAGCTGTTCGCG
TTTTACATCACACTCGCTTCAGGCGGTGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576

Multiple sequence alignment