Detailed information NTG0979527

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AAEO81_RS26975
• Genome accession: NZ_CP151650
• Coordinates: 5997782..5999122 (+)
• Length: 446 a.a.
• NCBI ID: WP_341960060.1
• Uniprot ID: -
• Organism: Pseudomonas sp. RC10
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5992782..6004122

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAEO81_RS26950 (AAEO81_26950)	pgeF	5992937..5993674 (-)	738	WP_341964631.1	peptidoglycan editing factor PgeF	-
AAEO81_RS26955 (AAEO81_26955)	rluD	5993683..5994645 (-)	963	WP_166597123.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AAEO81_RS26960 (AAEO81_26960)	-	5994797..5995813 (+)	1017	WP_166597124.1	outer membrane protein assembly factor BamD	-
AAEO81_RS26965 (AAEO81_26965)	-	5995958..5996197 (+)	240	WP_256665328.1	PP0621 family protein	-
AAEO81_RS26970 (AAEO81_26970)	pilS	5996187..5997779 (+)	1593	WP_166597125.1	ATP-binding protein	Regulator
AAEO81_RS26975 (AAEO81_26975)	pilR	5997782..5999122 (+)	1341	WP_341960060.1	sigma-54 dependent transcriptional regulator	Regulator
AAEO81_RS26980 (AAEO81_26980)	-	5999198..5999767 (+)	570	WP_341960062.1	nucleotidyltransferase domain-containing protein	-
AAEO81_RS26985 (AAEO81_26985)	-	5999786..6000208 (+)	423	WP_341960064.1	hypothetical protein	-
AAEO81_RS26990 (AAEO81_26990)	thiO	6000205..6001308 (-)	1104	WP_341964632.1	glycine oxidase ThiO	-
AAEO81_RS26995 (AAEO81_26995)	-	6001499..6002035 (+)	537	WP_341960066.1	GspH/FimT family pseudopilin	-
AAEO81_RS27000 (AAEO81_27000)	pilV	6002035..6002583 (+)	549	WP_341960068.1	type IV pilus modification protein PilV	-
AAEO81_RS27005 (AAEO81_27005)	-	6002583..6003371 (+)	789	WP_341960070.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AAEO81_RS27010 (AAEO81_27010)	-	6003368..6003928 (+)	561	WP_341960072.1	PilX N-terminal domain-containing pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50204.56 Da
• Isoelectric Point: 6.7052

>NTDB_id=979527 AAEO81_RS26975 WP_341960060.1 5997782..5999122(+) (pilR) [Pseudomonas sp. RC10]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEAQDWLAREPFDLCLTDMRLPDGNGLELVQHIQKRHAQVPVA
MITAFGSLDTAIHALKAGAFDFLTKPVDLGRLRELVGSALRLHKSPLNENSIDNRLLGTSPPMQALRKQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRIDKPFVPVNCGAIPSELMESEFFGHRKGSFTGAHEDKPGLFQVANGGTLFLDEVADL
PLAMQVKLLRAIQEKSVRPVGGQQEQVVDVRVLCATHKDLSVEVAAQRFRQDLYYRLNVIELRVPPLRERREDIEDIANN
VLRRLAENATLPPARLAPQALSALRSYRFPGNVRELENMLERAYTLCENDQINADDLRLAEPVSTSEQDGPSLADIDNLE
DYLESIERKLILQALEETRWNRTAAAQRLNLTFRSMRYRLKKLGLE

Nucleotide

• Length: 1341 bp

>NTDB_id=979527 AAEO81_RS26975 WP_341960060.1 5997782..5999122(+) (pilR) [Pseudomonas sp. RC10]
ATGAGCCCACGGCAAAAAATCCTGATCGTCGATGACGAGCCCGACATTCGTGAACTGCTGGAAATCACGCTGGGCCGGAT
GAAACTGGACACCCGCAGCGCGCGGAACGTCAAGGAAGCACAAGACTGGCTGGCCCGCGAGCCCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCCTGGAACTCGTGCAACACATTCAGAAACGTCACGCGCAGGTTCCCGTGGCG
ATGATCACCGCTTTCGGCAGTCTCGACACCGCGATTCATGCCCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCCGT
GGATTTGGGACGACTGCGCGAACTGGTGGGCAGCGCGTTGCGTCTGCACAAATCGCCACTCAATGAAAACAGCATCGACA
ACCGACTGCTTGGCACTTCCCCGCCGATGCAGGCGCTGCGCAAACAGATCGGCAAGCTGGCACGCAGTCAGGCGCCGATC
TACATCAGCGGCGAATCCGGCAGCGGTAAAGAACTGGTGGCGCGCCTGATCCACGAACAAGGCCCGCGCATCGACAAGCC
GTTCGTGCCGGTCAACTGCGGCGCGATCCCAAGCGAATTGATGGAAAGCGAATTCTTCGGCCACCGCAAAGGCAGCTTCA
CCGGCGCCCACGAAGACAAGCCGGGACTGTTTCAGGTCGCCAACGGCGGCACCTTGTTTCTGGACGAAGTGGCTGACTTG
CCACTGGCCATGCAGGTCAAACTGCTGCGCGCGATCCAGGAAAAATCCGTACGCCCGGTCGGGGGCCAGCAGGAACAAGT
GGTGGATGTTCGCGTCCTGTGCGCCACCCACAAAGACCTCAGCGTCGAAGTGGCGGCCCAGCGTTTCCGCCAGGACCTCT
ACTACCGCCTCAACGTCATCGAACTGCGCGTCCCCCCACTGCGCGAACGCCGCGAAGACATTGAAGACATTGCCAATAAC
GTCCTTCGTCGTCTCGCTGAAAACGCCACCCTGCCCCCTGCCCGCCTGGCGCCTCAGGCGTTGAGCGCGCTGAGGAGCTA
CCGCTTTCCCGGCAACGTCCGCGAACTGGAAAACATGCTCGAACGGGCTTACACCCTTTGCGAAAACGACCAGATCAACG
CCGACGACCTGCGCCTCGCCGAGCCGGTCAGCACCTCGGAACAAGACGGCCCGAGCCTCGCCGACATCGACAATCTGGAA
GACTACCTGGAAAGCATCGAACGCAAGCTCATCCTGCAGGCGCTGGAAGAGACGCGCTGGAACAGAACGGCAGCGGCGCA
GCGGTTGAACCTGACGTTCCGGTCGATGCGGTATCGGTTGAAGAAGCTGGGGTTGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.813	99.327	0.803
pilR	Acinetobacter baumannii strain A118	48.802	100	0.502
luxO	Vibrio cholerae strain A1552	37.723	100	0.379