Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AAEO81_RS26970 Genome accession   NZ_CP151650
Coordinates   5996187..5997779 (+) Length   530 a.a.
NCBI ID   WP_166597125.1    Uniprot ID   -
Organism   Pseudomonas sp. RC10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5991187..6002779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO81_RS26950 (AAEO81_26950) pgeF 5992937..5993674 (-) 738 WP_341964631.1 peptidoglycan editing factor PgeF -
  AAEO81_RS26955 (AAEO81_26955) rluD 5993683..5994645 (-) 963 WP_166597123.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AAEO81_RS26960 (AAEO81_26960) - 5994797..5995813 (+) 1017 WP_166597124.1 outer membrane protein assembly factor BamD -
  AAEO81_RS26965 (AAEO81_26965) - 5995958..5996197 (+) 240 WP_256665328.1 PP0621 family protein -
  AAEO81_RS26970 (AAEO81_26970) pilS 5996187..5997779 (+) 1593 WP_166597125.1 ATP-binding protein Regulator
  AAEO81_RS26975 (AAEO81_26975) pilR 5997782..5999122 (+) 1341 WP_341960060.1 sigma-54 dependent transcriptional regulator Regulator
  AAEO81_RS26980 (AAEO81_26980) - 5999198..5999767 (+) 570 WP_341960062.1 nucleotidyltransferase domain-containing protein -
  AAEO81_RS26985 (AAEO81_26985) - 5999786..6000208 (+) 423 WP_341960064.1 hypothetical protein -
  AAEO81_RS26990 (AAEO81_26990) thiO 6000205..6001308 (-) 1104 WP_341964632.1 glycine oxidase ThiO -
  AAEO81_RS26995 (AAEO81_26995) - 6001499..6002035 (+) 537 WP_341960066.1 GspH/FimT family pseudopilin -
  AAEO81_RS27000 (AAEO81_27000) pilV 6002035..6002583 (+) 549 WP_341960068.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58832.94 Da        Isoelectric Point: 6.8153

>NTDB_id=979526 AAEO81_RS26970 WP_166597125.1 5996187..5997779(+) (pilS) [Pseudomonas sp. RC10]
MTAETLSLATPQAQRILRLYHLYRLSIGILLVLLISSSLDAELLELADIELFRTGCWLYLVFNILVVVLLERPTRQGQLF
TLATTDAIMLCALFYAGGGAPSGIGNLIVASVAISNVLLRKRTGLLIAAISAIGIIYLTFYISYHKPAAANHFVQAGSLG
ALCFAAALLVQTLARRLQVSEDIAEQRAADVDNLEELNALILERMRTGILVLDADHKVLLANHSALTLLGHERLLGEAID
LYSPQLVERLRQWQINSSMIPRSMTTSAIGPVLRPGFIALTRGHQRHTLVFLDDLSQISQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLHESEELAAPDRRLSQIIQDQSRRMNLVIENVLQLSRRRQTEPHLLDLRQWLEHFVADFRSRLPTD
QSLHVEIGFGTLTTRMDAEQLQQVMTNLVQNGLRYSGQLHERAQVWLRLFHDAHSDLPSLEVLDDGPGVAAEHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQANLDYTPREGGGSCMRVTFAHPFKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=979526 AAEO81_RS26970 WP_166597125.1 5996187..5997779(+) (pilS) [Pseudomonas sp. RC10]
GTGACCGCTGAAACCCTTTCGCTGGCCACCCCTCAGGCCCAGCGCATCCTGCGGTTGTATCACCTCTATCGCCTGAGCAT
TGGCATCCTGCTGGTGCTGCTGATTTCCAGCAGCCTGGACGCCGAACTGCTGGAGCTGGCGGATATCGAGCTGTTTCGCA
CCGGCTGCTGGCTGTATCTGGTGTTCAACATCCTGGTGGTCGTGCTGCTTGAACGACCGACCCGTCAAGGGCAACTGTTC
ACCCTGGCCACGACCGACGCGATCATGCTCTGCGCGCTGTTCTACGCGGGCGGTGGCGCGCCGAGTGGAATTGGCAACCT
GATCGTCGCGTCGGTCGCGATCAGCAATGTCTTGCTGCGCAAGCGCACAGGCCTGCTGATCGCCGCCATTTCCGCGATTG
GCATCATTTACCTGACCTTCTACATCAGCTATCACAAGCCTGCTGCCGCCAATCACTTCGTTCAGGCCGGCTCCCTGGGT
GCGCTGTGTTTCGCGGCAGCCCTGTTGGTGCAGACCCTGGCCAGACGCTTGCAGGTGAGCGAAGACATCGCCGAACAACG
TGCCGCCGATGTCGACAACCTTGAAGAGCTCAACGCGCTCATCCTTGAACGCATGCGCACGGGCATTCTGGTGCTGGACG
CCGATCACAAGGTGTTGCTGGCCAATCACAGCGCGCTCACGTTGTTGGGTCACGAGCGCCTACTGGGGGAAGCCATTGAT
CTGTACTCGCCCCAACTGGTGGAGCGGCTGCGGCAATGGCAGATCAACTCGTCGATGATTCCGCGCAGCATGACCACGTC
GGCGATCGGCCCCGTGTTGCGCCCCGGCTTCATCGCGCTGACTCGCGGGCACCAGCGGCACACCCTGGTGTTTCTCGACG
ACCTTTCGCAAATCTCCCAACAGGCCCAGCAACTCAAGCTCGCCGCGTTAGGTCGGCTGACGGCTGGCATTGCCCATGAA
ATTCGCAACCCCCTGGGCGCGATCAGCCACGCAGCCCAGCTGCTGCATGAATCCGAGGAACTGGCGGCGCCGGACCGGCG
TCTCAGTCAGATCATTCAAGATCAATCGCGACGGATGAATCTGGTGATCGAGAACGTCTTGCAGCTGTCCCGCCGACGTC
AGACCGAACCGCACCTGCTCGACCTCCGGCAGTGGCTCGAACACTTCGTCGCCGACTTCCGCAGTCGACTGCCGACCGAT
CAGTCCCTGCATGTCGAGATCGGTTTCGGCACCCTCACTACCCGCATGGACGCCGAACAACTCCAGCAGGTCATGACCAA
CCTCGTGCAGAACGGCCTGCGCTACAGCGGCCAATTGCATGAGCGTGCGCAGGTCTGGCTGAGGCTGTTTCATGATGCCC
ACAGCGACCTGCCAAGCCTTGAAGTGCTGGACGATGGCCCCGGCGTCGCGGCCGAGCACCTGTCGAAAATCTTCGAGCCG
TTTTTCACCACGGAAAGCAAAGGCACGGGGCTGGGGCTGTACCTTTCGCGAGAATTGTGCGAAAGCAATCAGGCGAACCT
GGATTACACACCACGGGAAGGTGGCGGCAGTTGTATGCGGGTCACCTTCGCCCATCCGTTCAAATTGAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

63.277

100

0.634

Multiple sequence alignment