Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACLQ7P_RS15440 Genome accession   NZ_CP181322
Coordinates   2871996..2872691 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2866996..2877691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS15415 (ACLQ7P_15415) minD 2867932..2868738 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  ACLQ7P_RS15420 (ACLQ7P_15420) minC 2868740..2869420 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  ACLQ7P_RS15425 (ACLQ7P_15425) mreD 2869473..2869991 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  ACLQ7P_RS15430 (ACLQ7P_15430) mreC 2869988..2870860 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACLQ7P_RS15435 (ACLQ7P_15435) mreB 2870891..2871904 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACLQ7P_RS15440 (ACLQ7P_15440) ysxA/radC 2871996..2872691 (-) 696 WP_003246034.1 RadC family protein Machinery gene
  ACLQ7P_RS15445 (ACLQ7P_15445) maf 2872728..2873297 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ACLQ7P_RS15450 (ACLQ7P_15450) spoIIB 2873450..2874448 (-) 999 WP_095843864.1 stage II sporulation protein SpoIIB -
  ACLQ7P_RS15455 (ACLQ7P_15455) comC 2874582..2875328 (-) 747 WP_026113741.1 prepilin peptidase Machinery gene
  ACLQ7P_RS15460 (ACLQ7P_15460) folC 2875469..2876761 (-) 1293 WP_003229640.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=979268 ACLQ7P_RS15440 WP_003246034.1 2871996..2872691(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=979268 ACLQ7P_RS15440 WP_003246034.1 2871996..2872691(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain JCK-1398]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATTTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424