Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   ACGHT2_RS02845 Genome accession   NZ_AP031455
Coordinates   507374..508024 (-) Length   216 a.a.
NCBI ID   WP_058692777.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 502374..513024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS02810 (K460107A9_04780) - 503011..503928 (-) 918 WP_058692776.1 sensor histidine kinase KdpD -
  ACGHT2_RS02815 (K460107A9_04790) - 503931..504629 (-) 699 WP_003063663.1 response regulator transcription factor -
  ACGHT2_RS02820 - 504691..504891 (-) 201 Protein_485 hypothetical protein -
  ACGHT2_RS02825 (K460107A9_04800) - 504931..505131 (-) 201 WP_003063668.1 helix-turn-helix transcriptional regulator -
  ACGHT2_RS02830 (K460107A9_04810) - 505219..505546 (-) 328 Protein_487 conjugal transfer protein -
  ACGHT2_RS02835 (K460107A9_04820) - 505549..505818 (+) 270 Protein_488 sodium transporter -
  ACGHT2_RS02840 (K460107A9_04830) - 505951..507291 (-) 1341 WP_003063674.1 Nramp family divalent metal transporter -
  ACGHT2_RS02845 (K460107A9_04840) cclA/cilC 507374..508024 (-) 651 WP_058692777.1 A24 family peptidase Machinery gene
  ACGHT2_RS02850 (K460107A9_04850) - 508154..508684 (+) 531 WP_013851567.1 DNA starvation/stationary phase protection protein -
  ACGHT2_RS02855 (K460107A9_04860) - 508855..509064 (+) 210 WP_012961615.1 YqgQ family protein -
  ACGHT2_RS02860 (K460107A9_04870) - 509057..510025 (+) 969 WP_003063681.1 ROK family glucokinase -
  ACGHT2_RS02865 (K460107A9_04880) - 510036..510416 (+) 381 WP_003063685.1 rhodanese-like domain-containing protein -
  ACGHT2_RS02870 (K460107A9_04890) - 510431..511477 (+) 1047 WP_270619630.1 hypothetical protein -

Sequence


Protein


Download         Length: 216 a.a.        Molecular weight: 24842.73 Da        Isoelectric Point: 6.0630

>NTDB_id=97915 ACGHT2_RS02845 WP_058692777.1 507374..508024(-) (cclA/cilC) [Streptococcus pasteurianus strain k46-0107-A9]
MDILLFFFLGASIASFLSLIVDRFPEKSIIFPASHCDSCGKQLAIRDLIPIFSQLINHSRCRFCHTKIPFWYGLLELYFG
VIVVLYYCALLSLDQVFILFFSTTLSLYDLKRQEFPLLVWLLPSIFLLFVTPINALAIILLAFGIMAELIDLKIGSGDFF
YLASLSLLLDVQTILWIIELGSLSGIIYYFFQTNKRIPFVPFLFLGYLISFIFNHD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=97915 ACGHT2_RS02845 WP_058692777.1 507374..508024(-) (cclA/cilC) [Streptococcus pasteurianus strain k46-0107-A9]
ATGGACATTTTATTATTCTTTTTTCTAGGGGCTTCTATTGCTTCTTTTCTCAGTTTAATCGTTGATCGATTTCCTGAAAA
ATCAATCATTTTTCCTGCCAGTCACTGTGATTCTTGTGGAAAACAACTTGCCATTCGTGATTTGATTCCTATTTTTTCTC
AACTGATAAATCATTCACGTTGTCGTTTTTGCCACACCAAAATTCCTTTCTGGTATGGACTGTTAGAACTTTATTTTGGG
GTCATTGTCGTACTTTACTATTGCGCACTTCTCTCACTCGACCAAGTTTTTATCTTGTTTTTTAGCACAACGCTTAGTCT
TTATGACTTGAAACGTCAAGAGTTTCCATTGTTGGTTTGGCTCCTTCCAAGTATTTTTTTGCTTTTTGTCACGCCGATTA
ATGCGCTAGCTATTATTCTTTTGGCTTTTGGGATAATGGCAGAGCTGATTGATTTGAAAATCGGTAGCGGTGATTTTTTC
TACCTTGCCAGTTTGAGTCTGCTTCTTGACGTTCAAACCATTTTATGGATTATCGAACTTGGCTCTCTTTCAGGTATTAT
TTACTACTTTTTCCAGACAAATAAACGAATTCCCTTTGTGCCATTTTTGTTTTTAGGATACCTGATTTCATTCATTTTTA
ACCATGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

47.03

93.519

0.44

  cclA/cilC Streptococcus pneumoniae Rx1

46.04

93.519

0.431

  cclA/cilC Streptococcus pneumoniae D39

46.04

93.519

0.431

  cclA/cilC Streptococcus pneumoniae R6

46.04

93.519

0.431

  cclA/cilC Streptococcus pneumoniae TIGR4

46.04

93.519

0.431

  cclA/cilC Streptococcus mitis NCTC 12261

45.05

93.519

0.421


Multiple sequence alignment