Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AADW22_RS09355 Genome accession   NZ_CP151529
Coordinates   1905710..1906234 (-) Length   174 a.a.
NCBI ID   WP_005853386.1    Uniprot ID   A0A345R0M7
Organism   Sulfitobacter sp. PM12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1900710..1911234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADW22_RS09330 (AADW22_09320) - 1901150..1902124 (-) 975 WP_407473571.1 site-specific tyrosine recombinase XerD -
  AADW22_RS09335 (AADW22_09325) - 1902124..1903692 (-) 1569 WP_407473572.1 hypothetical protein -
  AADW22_RS09340 (AADW22_09330) - 1903689..1903838 (-) 150 WP_005853380.1 hypothetical protein -
  AADW22_RS09345 (AADW22_09335) - 1903919..1904509 (+) 591 WP_407473573.1 shikimate kinase -
  AADW22_RS09350 (AADW22_09340) aroB 1904509..1905624 (+) 1116 WP_407473574.1 3-dehydroquinate synthase -
  AADW22_RS09355 (AADW22_09345) ssb 1905710..1906234 (-) 525 WP_005853386.1 single-stranded DNA-binding protein Machinery gene
  AADW22_RS09360 (AADW22_09350) - 1906455..1907039 (+) 585 WP_278376023.1 lytic transglycosylase domain-containing protein -
  AADW22_RS09365 (AADW22_09355) - 1907213..1907740 (+) 528 WP_180827655.1 hypothetical protein -
  AADW22_RS09370 (AADW22_09360) - 1907815..1909902 (-) 2088 WP_407473575.1 dipeptide ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18347.92 Da        Isoelectric Point: 5.0178

>NTDB_id=978969 AADW22_RS09355 WP_005853386.1 1905710..1906234(-) (ssb) [Sulfitobacter sp. PM12]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRIAEQYLKKGSKVYI
EGQLQTRKWQDQSGQDKYSTEVVLQGFGGTLTMLDGRDGGGSGGGGNYGGGGGGYDSGPSDQGGYGGGYDSGPSGGGNDG
GRGSSRDLDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=978969 AADW22_RS09355 WP_005853386.1 1905710..1906234(-) (ssb) [Sulfitobacter sp. PM12]
ATGGCCGGCTCAGTGAATAAAGTGATCCTAATCGGGAATCTGGGGCGCGATCCCGAAGTGCGTTCGTTCCAGAACGGCGG
CAAAGTGTGCAACCTGCGCATCGCGACATCCGAGACATGGAAAGACCGCAACACCGGCGAGCGCCGCGAAAAGACCGAAT
GGCATTCGGTGGCGATCTTTCAGGAAGGGCTTGTGCGCATTGCAGAGCAGTACCTGAAGAAGGGTTCCAAAGTATATATC
GAAGGCCAGTTGCAAACCCGCAAATGGCAAGATCAATCCGGTCAAGATAAATACAGCACCGAAGTTGTCCTGCAGGGCTT
TGGCGGCACGCTGACCATGCTCGATGGCCGCGACGGTGGTGGTTCCGGTGGTGGTGGCAACTACGGCGGCGGCGGTGGCG
GCTACGACAGCGGCCCGTCGGATCAGGGCGGCTACGGTGGCGGATATGACAGTGGCCCCTCGGGCGGCGGCAACGACGGT
GGTCGTGGCTCCTCGCGCGATCTGGATGATGAAATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345R0M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.023

99.425

0.517
  ssb Glaesserella parasuis strain SC1401

45.789

100

0.5
  ssb Neisseria meningitidis MC58

41.341

100

0.425
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.425

Multiple sequence alignment