Detailed information NTG0978091

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: ACM6AQ_RS07910
• Genome accession: NZ_CP181136
• Coordinates: 1639725..1640411 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692876.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain AG21-0619
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1634725..1645411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM6AQ_RS07865 (ACM6AQ_07865)	rpmA	1635566..1635850 (-)	285	WP_000916186.1	50S ribosomal protein L27	-
ACM6AQ_RS07870 (ACM6AQ_07870)	-	1635862..1636182 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
ACM6AQ_RS07875 (ACM6AQ_07875)	rplU	1636188..1636496 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
ACM6AQ_RS07880 (ACM6AQ_07880)	mreD	1636663..1637193 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
ACM6AQ_RS07885 (ACM6AQ_07885)	mreC	1637193..1638035 (-)	843	WP_031868768.1	rod shape-determining protein MreC	-
ACM6AQ_RS07890 (ACM6AQ_07890)	-	1638233..1638352 (-)	120	WP_000840603.1	hypothetical protein	-
ACM6AQ_RS07895 (ACM6AQ_07895)	-	1638426..1638899 (-)	474	WP_072491711.1	DUF4930 family protein	-
ACM6AQ_RS07900 (ACM6AQ_07900)	-	1639059..1639256 (+)	198	WP_000025835.1	hypothetical protein	-
ACM6AQ_RS07905 (ACM6AQ_07905)	-	1639373..1639657 (-)	285	WP_000171863.1	hypothetical protein	-
ACM6AQ_RS07910 (ACM6AQ_07910)	ysxA/radC	1639725..1640411 (-)	687	WP_000692876.1	RadC family protein	Machinery gene
ACM6AQ_RS07915 (ACM6AQ_07915)	-	1640408..1641115 (-)	708	WP_000261111.1	prepilin peptidase	-
ACM6AQ_RS07920 (ACM6AQ_07920)	-	1641377..1642648 (-)	1272	WP_001108341.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
ACM6AQ_RS07925 (ACM6AQ_07925)	-	1642661..1645291 (-)	2631	WP_098817882.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25297.21 Da
• Isoelectric Point: 6.7572

>NTDB_id=978091 ACM6AQ_RS07910 WP_000692876.1 1639725..1640411(-) (ysxA/radC) [Staphylococcus aureus strain AG21-0619]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=978091 ACM6AQ_RS07910 WP_000692876.1 1639725..1640411(-) (ysxA/radC) [Staphylococcus aureus strain AG21-0619]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377