Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AADV58_RS15960 Genome accession   NZ_CP151406
Coordinates   3283850..3284314 (-) Length   154 a.a.
NCBI ID   WP_028994292.1    Uniprot ID   -
Organism   Azonexus hydrophilus strain NCP973     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3278850..3289314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADV58_RS15945 (AADV58_15945) rfaE2 3281186..3281674 (+) 489 WP_341743691.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase -
  AADV58_RS15950 (AADV58_15950) - 3281683..3282807 (-) 1125 WP_051295290.1 ABC transporter substrate-binding protein -
  AADV58_RS15955 (AADV58_15955) - 3282979..3283827 (-) 849 WP_341743692.1 HDOD domain-containing protein -
  AADV58_RS15960 (AADV58_15960) ssb 3283850..3284314 (-) 465 WP_028994292.1 single-stranded DNA-binding protein Machinery gene
  AADV58_RS15965 (AADV58_15965) - 3284326..3285510 (-) 1185 WP_341743693.1 MFS transporter -
  AADV58_RS15970 (AADV58_15970) - 3285662..3286237 (+) 576 WP_341743694.1 nuclear transport factor 2 family protein -
  AADV58_RS15975 (AADV58_15975) uvrA 3286334..3289159 (+) 2826 WP_341743695.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17138.13 Da        Isoelectric Point: 5.9594

>NTDB_id=976453 AADV58_RS15960 WP_028994292.1 3283850..3284314(-) (ssb) [Azonexus hydrophilus strain NCP973]
MASVNKVILVGNLGADPETRYTASGDAVCNIRLATTESWKDKNSGEKREITEWHRVVFYRKLAEIAGQYLRKGSQVYLEG
RIKTRKWQDKDGQDRYTTEIECTEMQMLGSRQGMGAPASQGGGGGYDEPTDYSPAPPKNKPKPSFDDLGDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=976453 AADV58_RS15960 WP_028994292.1 3283850..3284314(-) (ssb) [Azonexus hydrophilus strain NCP973]
ATGGCCTCGGTCAACAAGGTGATTCTCGTCGGCAATCTCGGTGCCGATCCCGAAACCCGCTACACGGCCAGCGGCGACGC
CGTTTGCAACATCCGCCTGGCGACGACGGAAAGCTGGAAGGACAAGAACAGCGGCGAGAAGCGCGAAATCACCGAATGGC
ATCGCGTGGTCTTCTACCGCAAGCTTGCCGAAATCGCCGGTCAGTACCTGCGCAAGGGCTCGCAGGTGTATCTGGAAGGC
CGCATCAAGACCCGCAAGTGGCAGGACAAGGACGGCCAGGACCGTTACACCACCGAAATCGAATGTACCGAAATGCAGAT
GCTGGGCTCGCGCCAGGGCATGGGCGCGCCGGCTTCGCAGGGCGGTGGCGGCGGTTACGACGAGCCGACCGATTACTCCC
CGGCGCCGCCGAAGAACAAGCCGAAACCCTCCTTCGACGATCTGGGTGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.222

100

0.61
  ssb Vibrio cholerae strain A1552

52.542

100

0.604
  ssb Neisseria meningitidis MC58

48.851

100

0.552
  ssb Neisseria gonorrhoeae MS11

48.851

100

0.552

Multiple sequence alignment