Detailed information NTG0976445

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AADV58_RS05260
• Genome accession: NZ_CP151406
• Coordinates: 1085051..1086409 (+)
• Length: 452 a.a.
• NCBI ID: WP_028995111.1
• Uniprot ID: -
• Organism: Azonexus hydrophilus strain NCP973
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1080051..1091409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AADV58_RS05240 (AADV58_05240)	-	1081288..1082619 (+)	1332	WP_028995114.1	TAXI family TRAP transporter solute-binding subunit	-
AADV58_RS05245 (AADV58_05245)	-	1082616..1083245 (+)	630	WP_028995113.1	ParA family protein	-
AADV58_RS05250 (AADV58_05250)	-	1083256..1083486 (+)	231	WP_051295407.1	PP0621 family protein	-
AADV58_RS05255 (AADV58_05255)	-	1083489..1085093 (+)	1605	WP_245580543.1	ATP-binding protein	-
AADV58_RS05260 (AADV58_05260)	pilR	1085051..1086409 (+)	1359	WP_028995111.1	sigma-54 dependent transcriptional regulator	Regulator
AADV58_RS05265 (AADV58_05265)	ampD	1086406..1086972 (+)	567	WP_028995110.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
AADV58_RS05270 (AADV58_05270)	-	1086949..1088109 (-)	1161	WP_341744242.1	pyridoxal phosphate-dependent aminotransferase	-
AADV58_RS05275 (AADV58_05275)	-	1088171..1090015 (-)	1845	WP_028995108.1	phosphoenolpyruvate carboxykinase (GTP)	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49396.28 Da
• Isoelectric Point: 5.1943

>NTDB_id=976445 AADV58_RS05260 WP_028995111.1 1085051..1086409(+) (pilR) [Azonexus hydrophilus strain NCP973]
MSVSRSERRPRGELNRVLVIDDEADIRELIDLTLARMGLAAECAGSVAEAKALLAASSFQLCLTDMRLPDGEGLEIVRYI
GEHHPSLPVAVITAWGSAENAVAALKAGAFDYLAKPVGLEQLRALVRSALRLPSESGQSDELRALTGDSPSMQQVREMIE
KMARSQAPIYISGESGSGKELAARLIHARSARSSGPFVPVNCGAIPENLMESEFFGYRKGAFTGADGDRDGFFQAANGGT
LFLDEVADLPLAMQVKLLRAIQEKRVRKVGNVTEEPVDLRIICATHRNLRECVDQGKFRQDLYYRLNVIELRMPPLRERM
EDIAPLVDSILNKLCGAAHPRLSASAIKALQLYSFPGNVRELENILERATALCGGDEIGPEDLHLEPEEVGGGGGDGQGR
GSESLDEYLNRLERHAILEALQQTEGNRTAAARLLGVTFRSLRYRLERLGIE

Nucleotide

• Length: 1359 bp

>NTDB_id=976445 AADV58_RS05260 WP_028995111.1 1085051..1086409(+) (pilR) [Azonexus hydrophilus strain NCP973]
GTGTCAGTCAGCCGTAGCGAACGACGCCCTCGCGGCGAGTTGAACCGTGTCCTCGTCATTGACGACGAGGCCGACATCCG
CGAATTGATCGACCTGACCCTGGCCCGCATGGGGCTGGCGGCGGAATGCGCCGGCTCGGTTGCCGAGGCCAAGGCATTGC
TGGCAGCGTCCTCCTTCCAGTTGTGCCTGACCGACATGCGCCTGCCGGACGGCGAGGGGCTGGAGATTGTCCGTTACATC
GGCGAGCATCATCCCAGCCTGCCGGTGGCGGTGATCACCGCCTGGGGCAGCGCCGAAAATGCCGTCGCCGCACTCAAGGC
CGGTGCCTTCGATTACCTGGCCAAGCCGGTCGGCCTGGAGCAGTTGCGGGCCCTGGTCCGCTCGGCTTTGCGGCTGCCCA
GCGAAAGCGGTCAGAGCGACGAATTGCGGGCGCTGACCGGCGATTCGCCGAGCATGCAGCAGGTCCGCGAGATGATCGAG
AAAATGGCGCGTAGCCAGGCGCCGATCTATATTTCTGGCGAGTCCGGCTCCGGCAAGGAACTGGCGGCGCGCCTGATCCA
CGCCCGCAGTGCGCGCAGCAGCGGACCCTTTGTCCCGGTCAACTGCGGGGCGATTCCCGAAAACCTGATGGAGAGCGAGT
TCTTCGGTTACCGCAAGGGTGCCTTTACCGGTGCCGACGGCGATCGCGACGGCTTTTTCCAGGCGGCCAACGGCGGCACC
CTGTTCCTCGACGAAGTCGCCGACCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGTGCCATTCAGGAGAAGCGTGTGCG
CAAGGTCGGCAACGTCACCGAAGAGCCGGTCGATCTGCGCATCATCTGCGCCACCCATCGCAATCTGCGCGAATGCGTCG
ACCAGGGCAAGTTCCGCCAGGATCTCTACTACCGGCTCAACGTCATCGAATTGCGCATGCCACCCTTGCGTGAGCGGATG
GAAGATATCGCGCCACTGGTCGACAGCATTCTCAACAAGCTGTGCGGCGCAGCGCATCCGCGGCTGTCAGCATCGGCGAT
CAAGGCGCTGCAGTTGTATTCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATTCTTGAGCGGGCGACGGCGCTCTGCG
GCGGCGACGAAATCGGTCCCGAGGACCTGCACCTCGAACCCGAGGAGGTTGGCGGAGGCGGGGGCGATGGTCAGGGACGC
GGCAGCGAAAGCCTGGACGAATACCTGAACCGCCTGGAGCGCCACGCCATCCTGGAAGCCCTGCAGCAAACCGAGGGCAA
CCGCACGGCGGCGGCGCGCTTGCTCGGCGTGACTTTTCGCTCCCTGCGTTATCGGCTGGAACGGCTGGGTATCGAATGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (17-126)

• Bacterial regulatory protein, Fis family (HTH_8) (411-448)

• Sigma-54 interaction domain (Sigma54_activat) (146-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.459	98.23	0.584
pilR	Acinetobacter baumannii strain A118	46.187	100	0.469
luxO	Vibrio cholerae strain A1552	37.557	97.788	0.367