Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AADH33_RS02760 Genome accession   NZ_CP151283
Coordinates   649401..650003 (+) Length   200 a.a.
NCBI ID   WP_348549484.1    Uniprot ID   A0AAU6S1X4
Organism   Psychrobacter sp. KFRI-CH2-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 644401..655003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADH33_RS02755 (AADH33_02755) - 647898..649262 (+) 1365 WP_348549483.1 MFS transporter -
  AADH33_RS02760 (AADH33_02760) ssb 649401..650003 (+) 603 WP_348549484.1 single-stranded DNA-binding protein Machinery gene
  AADH33_RS02765 (AADH33_02765) - 650476..650799 (+) 324 WP_348549485.1 H-NS histone family protein -
  AADH33_RS02770 (AADH33_02770) gspN 650962..651789 (+) 828 WP_348549486.1 type II secretion system protein N -
  AADH33_RS02775 (AADH33_02775) - 651799..652692 (+) 894 WP_348549487.1 type II secretion system protein N -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21535.31 Da        Isoelectric Point: 5.9090

>NTDB_id=976077 AADH33_RS02760 WP_348549484.1 649401..650003(+) (ssb) [Psychrobacter sp. KFRI-CH2-11]
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDQNGQDRYITEIRAEQMQMLDGASGGGQSQGGSYGSQGGQNSFGQQGGYNQAGGVAAQGMAQGGNQGGYNNQ
NAYNNQSNPQQNPFNQPAQNASQPKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=976077 AADH33_RS02760 WP_348549484.1 649401..650003(+) (ssb) [Psychrobacter sp. KFRI-CH2-11]
ATGCGCGGAGTTAATAAAGTTATCATCATCGGTAACCTTGGAGCAGACCCTGAGGCACGTCAGTTTAATAACGGTGGTAG
CGTGACCAATATCTCGGTTGCGACATCAGAGCAGTGGACAGACAAACAAAGCGGCGAAAAAAGAGAAGCGACCGAATGGC
ATCGTATCTCACTCTTTAATCGTCTAGGCGAGATTGCAGCGCAGTATCTTCGTAAAGGCAGTAAGGTCTATATCGAAGGC
AGTTTGCGCACGCGCAAATACCAAGACCAAAATGGTCAAGATCGCTATATCACCGAGATTCGCGCTGAGCAAATGCAGAT
GCTCGATGGCGCAAGCGGTGGCGGTCAAAGTCAAGGCGGGAGCTATGGTAGTCAAGGCGGCCAAAACAGCTTTGGTCAGC
AAGGCGGCTACAACCAAGCAGGCGGCGTAGCAGCTCAAGGCATGGCGCAGGGCGGTAATCAAGGGGGTTATAACAATCAA
AATGCTTATAACAACCAAAGCAATCCTCAGCAAAATCCATTCAATCAGCCAGCGCAAAACGCCTCTCAGCCTAAGCCAAC
AGCGATGCCTGATGGTCCAGTCGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.695

100

0.545
  ssb Vibrio cholerae strain A1552

48.276

100

0.49
  ssb Neisseria meningitidis MC58

41

100

0.41
  ssb Neisseria gonorrhoeae MS11

40.102

98.5

0.395

Multiple sequence alignment