Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACM3H0_RS11205 Genome accession   NZ_CP180685
Coordinates   2147636..2148226 (-) Length   196 a.a.
NCBI ID   WP_000272487.1    Uniprot ID   Q8DWW6
Organism   Streptococcus agalactiae strain M14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2142636..2153226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM3H0_RS11170 (ACM3H0_11170) - 2142657..2142974 (-) 318 WP_000940932.1 DUF1292 domain-containing protein -
  ACM3H0_RS11175 (ACM3H0_11175) ruvX 2143000..2143419 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  ACM3H0_RS11180 (ACM3H0_11180) - 2143419..2143685 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  ACM3H0_RS11185 (ACM3H0_11185) spx 2143887..2144285 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  ACM3H0_RS11190 (ACM3H0_11190) recA 2144501..2145640 (-) 1140 WP_001085741.1 recombinase RecA Machinery gene
  ACM3H0_RS11195 (ACM3H0_11195) cinA 2145714..2146973 (-) 1260 WP_001200978.1 competence/damage-inducible protein A Machinery gene
  ACM3H0_RS11200 (ACM3H0_11200) - 2147062..2147613 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  ACM3H0_RS11205 (ACM3H0_11205) ruvA 2147636..2148226 (-) 591 WP_000272487.1 Holliday junction branch migration protein RuvA Machinery gene
  ACM3H0_RS11210 (ACM3H0_11210) - 2148228..2149460 (-) 1233 WP_000657476.1 MDR family MFS transporter -
  ACM3H0_RS11215 (ACM3H0_11215) hexB 2149492..2151465 (-) 1974 WP_000034617.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACM3H0_RS11220 (ACM3H0_11220) - 2151691..2151894 (+) 204 WP_000191849.1 cold-shock protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21729.00 Da        Isoelectric Point: 5.7488

>NTDB_id=976077 ACM3H0_RS11205 WP_000272487.1 2147636..2148226(-) (ruvA) [Streptococcus agalactiae strain M14]
MYDYIKGKLSKITAKFIVVETAGLGYMIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=976077 ACM3H0_RS11205 WP_000272487.1 2147636..2148226(-) (ruvA) [Streptococcus agalactiae strain M14]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACGGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACAT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DWW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408

Multiple sequence alignment