Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACG61_RS06190 Genome accession   NZ_CP151276
Coordinates   1213460..1213990 (-) Length   176 a.a.
NCBI ID   WP_411839126.1    Uniprot ID   -
Organism   Paracoccus sp. ME4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1208460..1218990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG61_RS06165 (AACG61_06160) - 1208691..1210157 (-) 1467 WP_411839121.1 hypothetical protein -
  AACG61_RS06170 (AACG61_06165) - 1210150..1210338 (-) 189 WP_411839122.1 hypothetical protein -
  AACG61_RS06175 (AACG61_06170) - 1210464..1211015 (+) 552 WP_411839123.1 shikimate kinase -
  AACG61_RS06180 (AACG61_06175) aroB 1211012..1212121 (+) 1110 WP_411839124.1 3-dehydroquinate synthase -
  AACG61_RS06185 (AACG61_06180) - 1212197..1213243 (-) 1047 WP_411839125.1 Leu/Phe/Val dehydrogenase -
  AACG61_RS06190 (AACG61_06185) ssb 1213460..1213990 (-) 531 WP_411839126.1 single-stranded DNA-binding protein Machinery gene
  AACG61_RS06195 (AACG61_06190) - 1214162..1214788 (+) 627 WP_411839127.1 lytic transglycosylase domain-containing protein -
  AACG61_RS06200 (AACG61_06195) - 1214817..1215329 (-) 513 WP_411839128.1 transglycosylase SLT domain-containing protein -
  AACG61_RS06205 (AACG61_06200) lpdA 1215322..1216710 (-) 1389 WP_411839129.1 dihydrolipoyl dehydrogenase -
  AACG61_RS06210 (AACG61_06205) - 1216777..1217178 (-) 402 WP_411839130.1 MAPEG family protein -
  AACG61_RS06215 (AACG61_06210) - 1217178..1217432 (-) 255 WP_411839131.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18226.01 Da        Isoelectric Point: 5.9615

>NTDB_id=976063 AACG61_RS06190 WP_411839126.1 1213460..1213990(-) (ssb) [Paracoccus sp. ME4]
MAGSVNKVILVGNLGRDPEIRSFQNGGKVANLRIATSETWKDRTTGERKERTEWHTVAIFNEGLVGVVERYLKKGSKVYV
EGALETRKWQDQSGQDRYSTEVVLRGIGGTLTMLDGASGGGGGMGGGGMGGGGMGGGGRDSGGYDEYNQGGGSSSRGGGG
APQGGGRADYDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=976063 AACG61_RS06190 WP_411839126.1 1213460..1213990(-) (ssb) [Paracoccus sp. ME4]
ATGGCTGGCAGCGTCAACAAGGTCATCCTGGTCGGCAATCTGGGCCGCGACCCGGAAATCCGCAGCTTTCAGAACGGCGG
CAAGGTCGCGAACCTGCGCATCGCCACCTCCGAGACCTGGAAGGACCGCACCACCGGAGAGCGCAAGGAGCGCACCGAGT
GGCACACCGTGGCCATCTTCAACGAAGGTCTGGTCGGCGTGGTCGAGCGCTATCTGAAGAAGGGCAGCAAGGTCTATGTC
GAAGGCGCGCTGGAGACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACCGCTATTCCACCGAAGTGGTCCTGCGCGGCAT
CGGCGGCACGCTGACCATGCTGGACGGCGCCAGCGGTGGCGGCGGCGGCATGGGTGGCGGCGGCATGGGTGGCGGCGGCA
TGGGCGGGGGTGGCCGCGACAGCGGCGGCTATGACGAGTACAACCAGGGCGGCGGCTCGTCCTCGCGCGGTGGCGGCGGT
GCGCCGCAGGGCGGCGGCCGCGCGGATTACGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.668

100

0.523
  ssb Vibrio cholerae strain A1552

50.867

98.295

0.5
  ssb Neisseria gonorrhoeae MS11

36.872

100

0.375
  ssb Neisseria meningitidis MC58

36.872

100

0.375

Multiple sequence alignment