Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WMB06_RS21685 Genome accession   NZ_CP151275
Coordinates   4782019..4782531 (+) Length   170 a.a.
NCBI ID   WP_341676653.1    Uniprot ID   -
Organism   Niveibacterium sp. SC-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4777019..4787531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMB06_RS21675 (WMB06_21675) uvrA 4777720..4780545 (-) 2826 WP_341676651.1 excinuclease ABC subunit UvrA -
  WMB06_RS21680 (WMB06_21680) - 4780676..4782019 (+) 1344 WP_341676652.1 MFS transporter -
  WMB06_RS21685 (WMB06_21685) ssb 4782019..4782531 (+) 513 WP_341676653.1 single-stranded DNA-binding protein Machinery gene
  WMB06_RS21690 (WMB06_21690) - 4782892..4783119 (-) 228 WP_341676654.1 hypothetical protein -
  WMB06_RS21695 (WMB06_21695) - 4783399..4784199 (-) 801 WP_341676655.1 alpha/beta fold hydrolase -
  WMB06_RS21700 (WMB06_21700) - 4784277..4784471 (+) 195 WP_341676656.1 DUF2905 family protein -
  WMB06_RS21705 (WMB06_21705) - 4784484..4784900 (+) 417 WP_341676657.1 STY0301 family protein -
  WMB06_RS21710 (WMB06_21710) hemE 4784994..4786058 (+) 1065 WP_341676658.1 uroporphyrinogen decarboxylase -
  WMB06_RS21715 (WMB06_21715) - 4786128..4787033 (-) 906 WP_341676659.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18221.08 Da        Isoelectric Point: 5.9515

>NTDB_id=976061 WMB06_RS21685 WP_341676653.1 4782019..4782531(+) (ssb) [Niveibacterium sp. SC-1]
MASVNKVILVGNLGADPETRYAPSGDAICNIRIATTDTWRDKASGDRKEATEWHRVVFFGKLAEIAGQYLRKGSQVYVEG
SLRTRKWQDKDGRDQYTTEIRADEMKMLGSRQGGGDAPSRGGYDQGGDDFAPAPAPRSGGGGAGGSRPQSRPAPAPAPSG
MNDFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=976061 WMB06_RS21685 WP_341676653.1 4782019..4782531(+) (ssb) [Niveibacterium sp. SC-1]
ATGGCTTCAGTTAACAAGGTGATCCTCGTCGGCAACCTCGGCGCCGACCCGGAAACCCGCTACGCCCCCAGCGGCGACGC
GATCTGCAACATCCGGATCGCCACGACCGACACCTGGCGCGACAAGGCCTCGGGCGATCGCAAGGAAGCCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGCCGAAATCGCTGGCCAGTATCTGCGCAAGGGTTCGCAGGTCTACGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGCAGGACAAGGATGGGCGTGACCAATACACGACCGAGATCCGTGCCGACGAAATGAAGAT
GCTCGGCTCCCGCCAGGGCGGCGGTGACGCACCCTCGCGCGGCGGCTACGACCAGGGTGGCGACGACTTCGCCCCGGCTC
CCGCACCGCGCAGCGGCGGCGGCGGTGCCGGCGGCAGCCGTCCGCAGTCGCGCCCCGCACCGGCGCCGGCTCCCAGCGGC
ATGAACGACTTCGACGACGACATCCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.892

100

0.565
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.559
  ssb Neisseria meningitidis MC58

49.714

100

0.512
  ssb Neisseria gonorrhoeae MS11

49.714

100

0.512

Multiple sequence alignment