Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AADQ96_RS22615 | Genome accession | NZ_CP151202 |
| Coordinates | 4634732..4635256 (-) | Length | 174 a.a. |
| NCBI ID | WP_003826621.1 | Uniprot ID | A0A5B0T4S2 |
| Organism | Citrobacter freundii strain CFTMDU | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4629732..4640256
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AADQ96_RS22605 (AADQ96_22605) | - | 4631575..4631856 (+) | 282 | WP_003031727.1 | YjcB family protein | - |
| AADQ96_RS22610 (AADQ96_22610) | - | 4631941..4634250 (-) | 2310 | WP_008324284.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| AADQ96_RS22615 (AADQ96_22615) | ssb | 4634732..4635256 (-) | 525 | WP_003826621.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| AADQ96_RS22620 (AADQ96_22620) | uvrA | 4635508..4638330 (+) | 2823 | WP_003031720.1 | excinuclease ABC subunit UvrA | - |
| AADQ96_RS22625 (AADQ96_22625) | - | 4638446..4638802 (-) | 357 | WP_003031719.1 | MmcQ/YjbR family DNA-binding protein | - |
| AADQ96_RS22630 (AADQ96_22630) | aphA | 4638930..4639643 (-) | 714 | WP_003031718.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18621.66 Da Isoelectric Point: 5.2456
>NTDB_id=975819 AADQ96_RS22615 WP_003826621.1 4634732..4635256(-) (ssb) [Citrobacter freundii strain CFTMDU]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=975819 AADQ96_RS22615 WP_003826621.1 4634732..4635256(-) (ssb) [Citrobacter freundii strain CFTMDU]
ATGGCCAGCAGAGGCGTAAATAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGTGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA
ATGGCCAGCAGAGGCGTAAATAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGTGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.889 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
56.831 |
100 |
0.598 |
| ssb | Neisseria meningitidis MC58 |
48.603 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
48.603 |
100 |
0.5 |