Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   R8474_RS10465 Genome accession   NZ_AP026914
Coordinates   2058240..2058902 (-) Length   220 a.a.
NCBI ID   WP_000649971.1    Uniprot ID   A0A0B7MFB3
Organism   Streptococcus pneumoniae strain PZ900700003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2053240..2063902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8474_RS10440 (PC0003_20320) - 2053390..2053656 (-) 267 WP_001278167.1 Veg family protein -
  R8474_RS10445 (PC0003_20330) dnaB 2053658..2055010 (-) 1353 WP_000852486.1 replicative DNA helicase -
  R8474_RS10450 (PC0003_20340) rplI 2055054..2055506 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  R8474_RS10455 (PC0003_20350) - 2055503..2057476 (-) 1974 WP_000715111.1 DHH family phosphoesterase -
  R8474_RS10460 (PC0003_20360) hpf 2057612..2058160 (-) 549 WP_000599107.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  R8474_RS10465 (PC0003_20370) comFC/cflB 2058240..2058902 (-) 663 WP_000649971.1 ComF family protein Machinery gene
  R8474_RS10470 (PC0003_20390) - 2058899..2060197 (-) 1299 Protein_2030 DEAD/DEAH box helicase -
  R8474_RS10475 (PC0003_20400) - 2060253..2060888 (+) 636 WP_000395739.1 YigZ family protein -
  R8474_RS10480 (PC0003_20410) cysK 2061173..2062093 (+) 921 WP_050259917.1 cysteine synthase A -
  R8474_RS10485 - 2062332..2062682 (-) 351 Protein_2033 IS66 family transposase -
  R8474_RS10490 - 2062682..2062974 (+) 293 Protein_2034 transposase -
  R8474_RS10495 (PC0003_20430) tnpB 2063115..2063438 (-) 324 WP_000973414.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25241.10 Da        Isoelectric Point: 7.3688

>NTDB_id=97533 R8474_RS10465 WP_000649971.1 2058240..2058902(-) (comFC/cflB) [Streptococcus pneumoniae strain PZ900700003]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=97533 R8474_RS10465 WP_000649971.1 2058240..2058902(-) (comFC/cflB) [Streptococcus pneumoniae strain PZ900700003]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CGACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAACAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTAGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCTTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7MFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

100

100

1
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914

Multiple sequence alignment