Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACK2OW_RS04915 Genome accession   NZ_CP180575
Coordinates   838630..839325 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain K3C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 833630..844325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS04890 (ACK2OW_04890) minD 834566..835372 (-) 807 WP_064670973.1 septum site-determining protein MinD -
  ACK2OW_RS04895 (ACK2OW_04895) minC 835374..836054 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  ACK2OW_RS04900 (ACK2OW_04900) mreD 836107..836625 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  ACK2OW_RS04905 (ACK2OW_04905) mreC 836622..837494 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACK2OW_RS04910 (ACK2OW_04910) mreB 837525..838538 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACK2OW_RS04915 (ACK2OW_04915) ysxA/radC 838630..839325 (-) 696 WP_003246034.1 RadC family protein Machinery gene
  ACK2OW_RS04920 (ACK2OW_04920) maf 839362..839931 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ACK2OW_RS04925 (ACK2OW_04925) spoIIB 840084..841082 (-) 999 WP_133954274.1 stage II sporulation protein SpoIIB -
  ACK2OW_RS04930 (ACK2OW_04930) comC 841216..841962 (-) 747 WP_163116893.1 prepilin peptidase Machinery gene
  ACK2OW_RS04935 (ACK2OW_04935) folC 842103..843395 (-) 1293 WP_416042567.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=974972 ACK2OW_RS04915 WP_003246034.1 838630..839325(-) (ysxA/radC) [Bacillus subtilis strain K3C]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=974972 ACK2OW_RS04915 WP_003246034.1 838630..839325(-) (ysxA/radC) [Bacillus subtilis strain K3C]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment