Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AABC73_RS25280 Genome accession   NZ_CP151076
Coordinates   5444117..5444653 (-) Length   178 a.a.
NCBI ID   WP_020290687.1    Uniprot ID   A0A085V9R0
Organism   Pseudomonas sp. G.S.17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5439117..5449653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABC73_RS25245 (AABC73_25255) - 5439209..5439910 (+) 702 WP_341524336.1 fumarylacetoacetate hydrolase family protein -
  AABC73_RS25250 (AABC73_25260) - 5439941..5440705 (+) 765 WP_341521412.1 SDR family oxidoreductase -
  AABC73_RS25255 (AABC73_25265) - 5440742..5441695 (+) 954 WP_341521413.1 2-hydroxyacid dehydrogenase -
  AABC73_RS25260 (AABC73_25270) - 5441747..5442358 (+) 612 WP_341521414.1 TetR family transcriptional regulator -
  AABC73_RS25265 (AABC73_25275) - 5442369..5442848 (+) 480 WP_331150752.1 nuclear transport factor 2 family protein -
  AABC73_RS25270 (AABC73_25280) - 5442945..5443349 (+) 405 WP_341521415.1 hypothetical protein -
  AABC73_RS25275 (AABC73_25285) - 5443349..5444062 (+) 714 WP_341521416.1 RES family NAD+ phosphorylase -
  AABC73_RS25280 (AABC73_25290) ssb 5444117..5444653 (-) 537 WP_020290687.1 single-stranded DNA-binding protein Machinery gene
  AABC73_RS25285 (AABC73_25295) - 5444959..5445756 (+) 798 WP_341521417.1 TnsA endonuclease N-terminal domain-containing protein -
  AABC73_RS25290 (AABC73_25300) - 5445771..5447888 (+) 2118 WP_341521418.1 hypothetical protein -
  AABC73_RS25295 (AABC73_25305) - 5447869..5449299 (+) 1431 WP_341521419.1 ATP-binding protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19614.77 Da        Isoelectric Point: 5.9505

>NTDB_id=974705 AABC73_RS25280 WP_020290687.1 5444117..5444653(-) (ssb) [Pseudomonas sp. G.S.17]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGEGAPQGQGGGGYQQNSAPRPQQSRPQQSAPQAQPQRESRPAPQ
QAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=974705 AABC73_RS25280 WP_020290687.1 5444117..5444653(-) (ssb) [Pseudomonas sp. G.S.17]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAAGTCGAAAAGACTGAGT
GGCACCGCGTTTCGATGTTCGGCAAAGTCGCCGAAATCGCTGGCGAGTACCTGCGCAAGGGCTCCCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGTCGTCCTCAAGGCGAAGGCGCTCCACAGGGTCAAGGTGGCGGTGGTTATCAGCAGAATTCTG
CACCGCGTCCTCAGCAGTCGCGTCCGCAGCAGTCCGCGCCTCAAGCTCAGCCGCAACGCGAATCGCGTCCGGCTCCGCAA
CAAGCGCCGCAACCGGCTGCAGATTTCGACAGCTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085V9R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.47

100

0.601
  ssb Neisseria gonorrhoeae MS11

51.397

100

0.517
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.506
  ssb Neisseria meningitidis MC58

50.282

99.438

0.5

Multiple sequence alignment