Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AABC73_RS24385 Genome accession   NZ_CP151076
Coordinates   5255795..5257132 (+) Length   445 a.a.
NCBI ID   WP_341524323.1    Uniprot ID   -
Organism   Pseudomonas sp. G.S.17     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5250795..5262132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABC73_RS24360 (AABC73_24370) pgeF 5250969..5251697 (-) 729 WP_341521298.1 peptidoglycan editing factor PgeF -
  AABC73_RS24365 (AABC73_24375) rluD 5251694..5252656 (-) 963 WP_065836188.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABC73_RS24370 (AABC73_24380) - 5252805..5253821 (+) 1017 WP_341521299.1 outer membrane protein assembly factor BamD -
  AABC73_RS24375 (AABC73_24385) - 5253968..5254207 (+) 240 WP_331152876.1 PP0621 family protein -
  AABC73_RS24380 (AABC73_24390) pilS 5254197..5255789 (+) 1593 WP_341521300.1 ATP-binding protein Regulator
  AABC73_RS24385 (AABC73_24395) pilR 5255795..5257132 (+) 1338 WP_341524323.1 sigma-54 dependent transcriptional regulator Regulator
  AABC73_RS24390 (AABC73_24400) thiO 5257237..5258343 (-) 1107 WP_341521301.1 glycine oxidase ThiO -
  AABC73_RS24395 (AABC73_24405) - 5258370..5258801 (-) 432 WP_341521302.1 type IV pilin protein -
  AABC73_RS24400 (AABC73_24410) - 5258815..5261937 (-) 3123 WP_341521303.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 50238.38 Da        Isoelectric Point: 6.6425

>NTDB_id=974703 AABC73_RS24385 WP_341524323.1 5255795..5257132(+) (pilR) [Pseudomonas sp. G.S.17]
MQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEAHDWLAREAFDLCLTDMRLPDGNGLELVQHIQQRHAQVPVAM
ITAHGNLDTAIHALKAGAFDFLTKPVDLGRLRELVSSALRLQAPSQSERSIDRRLLGDSPPIRALRLQIDKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIERPFIPVNCGAIPTELMESEFFGHRKGSFSGAHEDKPGLFQAANGGTLFLDEVADLP
LAMQVKLLRSIQEKSVRSIGDQQEQVVDVRILCATHKDLNAEVAAGRFRQDLYYRLNVIELAVPPLRERREDLDQLTAHV
LQRLANGSGQAAARLEPQALSALKSYRFPGNVRELENILERAYTLCENHRIDIGDLRLAQTAGPLEQDEHNLADIDNLED
YLENIERKIILQALEETRWNRTAAAQRLNLTFRSMRYRLKKLGLE

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=974703 AABC73_RS24385 WP_341524323.1 5255795..5257132(+) (pilR) [Pseudomonas sp. G.S.17]
ATCCAGCGACAAAAAATTCTGATCGTCGATGATGAACCAGACATTCGCGAACTCCTGGAAATCACCCTTGGCCGGATGAA
GCTCGATACCCGCAGCGCCCGCAACGTCAAGGAAGCTCATGACTGGCTGGCACGCGAAGCCTTCGATTTGTGCCTGACCG
ACATGCGCCTGCCGGACGGCAACGGCCTGGAACTGGTTCAGCACATCCAGCAGCGTCATGCGCAAGTGCCGGTGGCGATG
ATCACTGCCCACGGCAACCTCGACACCGCGATTCACGCGCTCAAGGCCGGGGCGTTCGACTTCCTGACCAAACCCGTGGA
CCTGGGCCGCCTTCGTGAGCTGGTAAGCAGCGCCCTGCGCCTGCAAGCGCCCAGCCAAAGCGAGCGCAGCATAGACCGCC
GCCTGCTGGGGGATTCGCCGCCCATTCGCGCCCTGCGCCTGCAAATCGACAAGCTGGCCCGCAGCCAGGCGCCGATCTAT
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGGCTGATTCATGAACAGGGGCCGCGCATTGAACGGCCATT
TATTCCGGTCAACTGTGGGGCCATTCCGACCGAGCTGATGGAAAGCGAGTTCTTCGGCCACCGCAAAGGCAGTTTCAGCG
GCGCCCACGAGGACAAGCCAGGACTGTTTCAGGCAGCAAACGGCGGTACGTTATTTCTCGATGAAGTCGCAGATTTGCCG
CTGGCGATGCAGGTAAAACTCCTGCGCTCGATTCAGGAAAAATCCGTGCGCAGCATCGGCGATCAGCAGGAACAGGTGGT
GGATGTGCGAATCCTGTGTGCAACCCACAAGGATTTGAACGCGGAAGTGGCGGCTGGACGTTTCCGGCAGGATTTGTATT
ACCGCCTCAATGTCATCGAACTCGCTGTGCCGCCGTTGCGGGAACGTCGCGAAGATCTTGATCAACTGACGGCACATGTC
CTACAGCGCCTGGCGAACGGTTCGGGGCAAGCTGCCGCACGTCTTGAACCCCAGGCGTTGTCGGCGCTGAAAAGCTATCG
ATTTCCGGGGAACGTGCGTGAACTGGAGAACATTCTGGAGCGCGCCTACACCCTGTGCGAAAACCACCGCATCGACATCG
GCGACCTGCGCCTTGCCCAAACCGCCGGACCGCTTGAACAGGATGAACACAACCTCGCCGACATCGACAACCTGGAGGAC
TATCTGGAAAACATCGAACGCAAGATCATCCTCCAGGCGCTGGAAGAAACCCGCTGGAACCGCACGGCTGCGGCGCAGCG
CCTGAACCTGACGTTTCGGTCGATGCGCTATCGGTTGAAGAAGTTGGGGCTGGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.876

100

0.789
  pilR Acinetobacter baumannii strain A118

48.812

100

0.508
  luxO Vibrio cholerae strain A1552

36.629

100

0.366

Multiple sequence alignment