Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AABC73_RS24380 Genome accession   NZ_CP151076
Coordinates   5254197..5255789 (+) Length   530 a.a.
NCBI ID   WP_341521300.1    Uniprot ID   -
Organism   Pseudomonas sp. G.S.17     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5249197..5260789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABC73_RS24360 (AABC73_24370) pgeF 5250969..5251697 (-) 729 WP_341521298.1 peptidoglycan editing factor PgeF -
  AABC73_RS24365 (AABC73_24375) rluD 5251694..5252656 (-) 963 WP_065836188.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABC73_RS24370 (AABC73_24380) - 5252805..5253821 (+) 1017 WP_341521299.1 outer membrane protein assembly factor BamD -
  AABC73_RS24375 (AABC73_24385) - 5253968..5254207 (+) 240 WP_331152876.1 PP0621 family protein -
  AABC73_RS24380 (AABC73_24390) pilS 5254197..5255789 (+) 1593 WP_341521300.1 ATP-binding protein Regulator
  AABC73_RS24385 (AABC73_24395) pilR 5255795..5257132 (+) 1338 WP_341524323.1 sigma-54 dependent transcriptional regulator Regulator
  AABC73_RS24390 (AABC73_24400) thiO 5257237..5258343 (-) 1107 WP_341521301.1 glycine oxidase ThiO -
  AABC73_RS24395 (AABC73_24405) - 5258370..5258801 (-) 432 WP_341521302.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58321.52 Da        Isoelectric Point: 6.9034

>NTDB_id=974702 AABC73_RS24380 WP_341521300.1 5254197..5255789(+) (pilS) [Pseudomonas sp. G.S.17]
MIAEALSLGSPQAQRILRLYHLYRLTIGIMLVLLISSGMDTELLEFVNPSLFRAGCWLYLVFNILVVVLLDRPGHKAQLF
ALAMADAIMLSGLFYAAGGPPSGIGNLLIASVAISNVLLRGRTGVVIAAVSAIGIIYLTFYISFSSPSAASHYVQAGSLG
ALCFAAALMVQALTRRLHISEVLAEQRATDVHNLEELNALILQRMRTGILVLDARRQVVLANQSALILLGHENLLGETID
SYSPQLVTRFRQWLINPVLVPQSISTSAIGPILRPTFVALNRGEQRQTLIFLEDLSQISQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLHESEALEGGDRRLNQIIQDQSLRMNRVIENVLQLSRRRQAEPQMLDLKAWLEQFVAEAHSSEAPN
QTIHLDIAAAPLVTRMDPEQLTQVLSNLLQNGLRYSGKQHAHAQVWLRLFQDPRSELPVLEVLDDGPGVADEHLSKLFEP
FYTTESKGTGLGLYLSRELCESNQAQLDYTFREGGGSCLRITFAHPLKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=974702 AABC73_RS24380 WP_341521300.1 5254197..5255789(+) (pilS) [Pseudomonas sp. G.S.17]
GTGATCGCTGAGGCTCTTTCCCTCGGTAGTCCACAAGCCCAACGGATTCTGCGGCTGTACCATCTGTATCGACTGACCAT
TGGCATCATGCTGGTCCTGTTGATCTCCAGCGGCATGGACACCGAGCTGCTGGAGTTCGTCAATCCGAGCCTGTTTCGGG
CCGGTTGCTGGCTGTATCTGGTGTTCAACATCCTGGTCGTGGTGCTGCTGGATCGGCCGGGCCACAAGGCGCAGCTTTTC
GCCCTGGCCATGGCCGACGCCATCATGCTCTCCGGATTGTTTTATGCCGCAGGCGGCCCACCCAGCGGCATCGGCAACCT
GTTGATTGCATCGGTGGCGATCAGCAACGTTCTGTTGCGCGGACGCACCGGTGTGGTGATCGCGGCCGTCTCGGCCATTG
GCATCATTTACCTGACGTTCTACATCAGTTTCAGCAGCCCTTCCGCCGCCAGCCATTACGTGCAGGCCGGCTCGCTGGGC
GCCCTGTGCTTTGCTGCTGCCCTGATGGTGCAAGCGCTGACTCGCCGACTGCACATCAGCGAAGTGCTGGCCGAACAGCG
CGCAACCGACGTCCACAACCTGGAAGAACTCAATGCGCTGATTCTGCAGCGCATGCGCACCGGCATTCTGGTTCTGGACG
CCCGTCGCCAGGTAGTGCTGGCCAACCAGAGCGCGTTGATCCTCCTGGGCCATGAAAACCTGCTGGGCGAGACCATCGAC
AGTTATTCCCCGCAACTGGTCACACGCTTTCGCCAATGGTTGATCAATCCGGTTCTGGTGCCGCAGAGCATCTCCACTTC
TGCCATCGGGCCAATCCTGCGACCGACATTCGTCGCGCTCAATCGGGGCGAGCAGCGCCAGACCCTGATTTTTCTCGAAG
ACCTTTCGCAGATTTCCCAACAGGCACAACAACTCAAGCTGGCCGCGCTGGGTCGCCTGACTGCCGGGATTGCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGCCACGCGGCGCAACTGCTGCATGAGTCCGAAGCGCTGGAAGGTGGCGACCGACG
CCTGAATCAGATCATTCAGGACCAGTCGTTACGCATGAACCGGGTCATTGAAAACGTGCTGCAACTGTCGCGACGTCGCC
AGGCTGAACCGCAAATGCTTGATCTCAAGGCCTGGCTCGAACAGTTCGTCGCCGAGGCGCACAGCAGCGAAGCGCCCAAC
CAGACCATTCATCTGGACATTGCAGCCGCGCCACTGGTCACCCGCATGGACCCGGAGCAGCTCACTCAGGTATTGAGCAA
TCTGCTGCAAAACGGCTTGCGCTACAGTGGTAAGCAGCATGCACACGCGCAGGTCTGGCTTCGGCTGTTTCAGGACCCGC
GCAGCGAATTGCCGGTACTGGAAGTGCTCGACGACGGCCCCGGCGTAGCTGACGAACATTTGAGCAAGCTTTTCGAGCCG
TTCTACACCACCGAAAGCAAGGGCACCGGCCTGGGCCTTTATCTTTCGAGAGAGCTTTGCGAGAGCAATCAGGCACAGCT
GGACTACACATTTCGGGAAGGTGGCGGCAGTTGCCTGCGCATCACCTTCGCTCACCCGTTGAAGTTGAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

63.585

100

0.636

Multiple sequence alignment