Detailed information NTG0974691

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: AABC73_RS12790
• Genome accession: NZ_CP151076
• Coordinates: 2768238..2769413 (+)
• Length: 391 a.a.
• NCBI ID: WP_341523893.1
• Uniprot ID: -
• Organism: Pseudomonas sp. G.S.17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2763238..2774413

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABC73_RS12760 (AABC73_12765)	-	2763488..2764279 (+)	792	WP_341523890.1	amino acid ABC transporter ATP-binding protein	-
AABC73_RS12765 (AABC73_12770)	-	2764311..2764697 (+)	387	WP_020290052.1	RidA family protein	-
AABC73_RS12770 (AABC73_12775)	-	2764803..2765567 (+)	765	WP_065836529.1	IclR family transcriptional regulator	-
AABC73_RS12775 (AABC73_12780)	-	2765586..2766791 (+)	1206	WP_341523891.1	amino acid deaminase	-
AABC73_RS12780 (AABC73_12785)	-	2766811..2767755 (+)	945	WP_341523892.1	sugar kinase	-
AABC73_RS12785 (AABC73_12790)	-	2767761..2768036 (-)	276	WP_020290056.1	peptidylprolyl isomerase	-
AABC73_RS12790 (AABC73_12795)	pilU	2768238..2769413 (+)	1176	WP_341523893.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
AABC73_RS12795 (AABC73_12800)	-	2769415..2770185 (-)	771	WP_341523894.1	3-hydroxybutyrate dehydrogenase	-
AABC73_RS12800 (AABC73_12805)	-	2770196..2771587 (-)	1392	WP_341523895.1	GntP family permease	-
AABC73_RS12805 (AABC73_12810)	-	2771908..2773320 (-)	1413	WP_341523896.1	sigma 54-interacting transcriptional regulator	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43083.48 Da
• Isoelectric Point: 6.5707

>NTDB_id=974691 AABC73_RS12790 WP_341523893.1 2768238..2769413(+) (pilU) [Pseudomonas sp. G.S.17]
MDFPALLKILASQDGSDLYLSTGAPPCAKFNGVLKPLGTETLKPGEIAAVAQGIMDAEQKLEFHRELEMNLAVSMAGIGR
FRINIFMQRNEVSIVARNIKLDIPRFEDLFLPPVLLDVIMEKHGLVLFVGGTGSGKSTSLAALIDYRNRHASGHIITIED
PVEFIHRHKKSIINQREVGVDTRSFHSALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRNQLLHDLGNNLKAFVSQRLVRTTDGKRRAAVEVMMGTPTIRDLIQRNELNELKGIMEKSGGLGMQTFDTAL
YELAIEGVISEEEALKHADSLNNVRLRLKLHGEGGVTGQLTTPPPPPTPAASVKVADWGLVDEREEGKPGI

Nucleotide

• Length: 1176 bp

>NTDB_id=974691 AABC73_RS12790 WP_341523893.1 2768238..2769413(+) (pilU) [Pseudomonas sp. G.S.17]
ATGGATTTTCCGGCGTTGTTGAAGATTCTGGCCAGCCAGGATGGATCGGACCTTTATCTTTCTACCGGTGCGCCGCCATG
CGCCAAGTTCAACGGCGTCCTCAAGCCGTTGGGCACTGAAACCCTGAAGCCGGGTGAAATTGCCGCTGTTGCACAAGGCA
TCATGGATGCTGAGCAAAAGCTGGAATTCCATCGTGAGCTGGAGATGAACCTCGCGGTTTCCATGGCTGGCATCGGCCGG
TTCCGGATCAACATTTTCATGCAGCGCAACGAAGTTTCCATCGTGGCGCGCAACATCAAGCTGGATATCCCGCGCTTCGA
GGATCTGTTTCTGCCGCCGGTGCTGCTCGATGTGATCATGGAGAAGCACGGGCTGGTGCTGTTTGTCGGCGGCACGGGCT
CGGGCAAGTCCACGTCATTGGCGGCGCTGATCGATTACCGCAATCGCCACGCCAGCGGCCACATCATCACCATTGAAGAC
CCGGTGGAGTTCATTCATCGCCACAAAAAATCGATCATCAATCAGCGCGAAGTGGGCGTCGACACGCGCAGTTTCCATTC
GGCCTTGAAAAACACGCTGCGCCAGGCGCCGGACGTGATTCTGATCGGTGAGATCCGCGACCGGGAAACCATGGAGCATG
CCCTGGCATTCGCCGATACCGGCCATCTGGCGATTTCAACGCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTTTTCCCGGAAGAGCGTCGCAATCAGTTGCTGCACGATCTGGGCAACAACCTCAAGGCCTTCGTTTCCCAGCG
ATTGGTCAGGACCACCGACGGCAAACGCCGCGCGGCGGTGGAGGTGATGATGGGCACGCCAACCATTCGCGACCTGATCC
AGCGCAATGAGCTCAACGAACTCAAAGGCATCATGGAAAAATCCGGCGGCCTGGGCATGCAGACCTTTGATACCGCGCTT
TACGAGTTGGCGATTGAGGGGGTCATCAGCGAAGAAGAGGCGCTCAAGCACGCCGACTCACTGAATAACGTGCGTCTGCG
CCTCAAGCTGCATGGGGAAGGTGGCGTTACCGGTCAGCTGACCACGCCACCGCCGCCACCGACGCCGGCAGCCAGCGTCA
AAGTAGCGGATTGGGGATTGGTGGATGAGCGTGAGGAAGGCAAGCCGGGCATCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (115-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	57.345	90.537	0.519
pilU	Acinetobacter baylyi ADP1	52.381	91.304	0.478
pilU	Vibrio cholerae strain A1552	51.429	89.514	0.46
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.353	94.885	0.373