Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AABM52_RS23320 Genome accession   NZ_CP150919
Coordinates   5226228..5228462 (-) Length   744 a.a.
NCBI ID   WP_347908277.1    Uniprot ID   -
Organism   Pseudomonas grandcourensis strain DGS24     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5221228..5233462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM52_RS23285 murB 5221609..5222628 (-) 1020 WP_347908271.1 UDP-N-acetylmuramate dehydrogenase -
  AABM52_RS23290 - 5222625..5223089 (-) 465 WP_347908273.1 low molecular weight protein-tyrosine-phosphatase -
  AABM52_RS23295 kdsB 5223089..5223853 (-) 765 WP_347908274.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABM52_RS23300 - 5223850..5224035 (-) 186 WP_003179363.1 Trm112 family protein -
  AABM52_RS23305 lpxK 5224059..5225069 (-) 1011 WP_347908275.1 tetraacyldisaccharide 4'-kinase -
  AABM52_RS23310 - 5225069..5225497 (-) 429 WP_347908276.1 biopolymer transporter ExbD -
  AABM52_RS23315 exbB 5225494..5226129 (-) 636 WP_167368554.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AABM52_RS23320 comA 5226228..5228462 (-) 2235 WP_347908277.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AABM52_RS23325 - 5228597..5229112 (+) 516 WP_347908278.1 DUF2062 domain-containing protein -
  AABM52_RS23330 - 5229191..5229970 (-) 780 WP_046037490.1 ABC transporter permease -
  AABM52_RS23335 - 5229967..5230899 (-) 933 WP_347908280.1 ABC transporter ATP-binding protein -
  AABM52_RS23340 - 5231032..5231655 (-) 624 WP_150754010.1 glutathione S-transferase family protein -
  AABM52_RS23345 - 5231699..5232358 (-) 660 WP_347908281.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81740.10 Da        Isoelectric Point: 10.1448

>NTDB_id=973808 AABM52_RS23320 WP_347908277.1 5226228..5228462(-) (comA) [Pseudomonas grandcourensis strain DGS24]
MRTGMMALALGLLTLRFLPALPPVWLWLAMPVAGLMLLPFRTYPVAFYLFGLSWACANAQWALDDRLPPALDGETRWVEG
RVTGLPRHDDGVVRFELTDIQSRRTRLPRQMRLAWYGGPPVNSGERWRLAVKLKRPIGLLNPQAFDYQAWLLAQRIGATG
TIKQGERLAPARGAWRDAIRQRLLAVDAQGRNGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGVVYLL
IAGLARFGLWPNRLPWLPWACGLAFAAALGYGMLAGFEVPVRRACLMIAMVLLWRLRFRHLGAWWPLLLALVGILLLEPL
ASLQPGFWLSFAAVAVLILTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLALGLPISLSGPLANLFAVPWISLVVLPPAL
LGTLLLPVPYVGEKLLWLAGGLIDGWFRALGLVSGEVPAWVPAAVPLWAWVIGAIGAFLLLLPRGVPMRPLGWPMLLMLV
LSPRPMLEEGMAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGELDQGERVVLPALRKLGVKGLDLMLISHAHADHAGGA
PAVARGLPVKQVVSGEPSDLPAQLQAGSCESGRQWTWDEVDFQLWHWPLAGDSNQNSCVLLIEANGERLLLSGDIDAAAE
RALLASPLAVPTDWLQAPHHGSRSSSSNALLDALQPKGALISRGQGNSFGHPHPTVIARYQKRGMAIYDSVEQGAIRLQL
GRFEPPWSMRQERRFWRDPPPLNP

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=973808 AABM52_RS23320 WP_347908277.1 5226228..5228462(-) (comA) [Pseudomonas grandcourensis strain DGS24]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTTTTGACCTTGCGTTTTTTACCGGCATTACCGCCGGTCTGGTTGTG
GCTGGCGATGCCGGTGGCGGGTTTGATGTTGCTGCCTTTCAGGACCTATCCGGTGGCGTTTTACCTGTTCGGTTTGAGCT
GGGCCTGCGCGAATGCGCAGTGGGCGCTGGATGACCGGTTGCCGCCGGCGCTGGACGGGGAAACCCGCTGGGTCGAAGGG
CGGGTCACGGGCTTGCCCCGGCATGACGACGGTGTCGTGCGTTTCGAATTGACCGATATCCAGTCCCGACGTACCCGGCT
GCCGCGGCAAATGCGTCTGGCCTGGTATGGCGGGCCACCGGTGAACAGTGGCGAGCGCTGGCGTCTGGCAGTCAAGTTGA
AGCGCCCGATCGGGCTCCTCAATCCGCAGGCCTTCGACTACCAGGCCTGGTTGCTGGCACAACGCATAGGGGCGACCGGG
ACAATCAAGCAGGGCGAACGCCTTGCGCCAGCCCGAGGGGCCTGGCGCGATGCTATCCGACAGCGATTGCTGGCGGTGGA
TGCCCAAGGGCGAAACGGCGCGTTGACGGCATTGGTGCTCGGGGACGGCGCCGGGCTGAGTCGCGAAGACTGGCAGGTAT
TGCAGGACACCGGCACGGTGCATCTGTTGGTGATTTCCGGGCAGCACATCGGGTTGCTGGCGGGCGTCGTGTATCTGCTG
ATCGCCGGCCTGGCCCGCTTTGGGCTGTGGCCGAACCGTCTGCCATGGTTGCCCTGGGCGTGTGGCCTGGCATTCGCCGC
GGCGCTCGGTTACGGGATGCTGGCCGGTTTCGAGGTGCCGGTACGACGGGCCTGCCTGATGATTGCAATGGTGTTGTTGT
GGCGCCTGCGGTTCCGTCATCTCGGTGCATGGTGGCCACTGTTGTTGGCACTCGTCGGGATTTTGTTGCTGGAGCCGCTG
GCCAGCCTTCAGCCTGGTTTCTGGTTGTCTTTCGCGGCTGTGGCCGTCTTGATTTTGACCTTCGGCGGACGTTTGGGGCC
TTGGCGTTGGTGGCAGACCTGGACCCGGGCCCAGTGGCTTATTGCAATCGGTCTGTGTCCGCTGTTACTGGCTTTGGGGT
TGCCAATCAGTCTCAGCGGGCCGCTGGCCAATTTGTTCGCGGTGCCCTGGATCAGTCTGGTGGTCCTGCCACCGGCGTTG
CTCGGGACGCTGTTGCTGCCGGTGCCTTACGTGGGTGAGAAATTGCTGTGGCTGGCGGGCGGCCTGATCGACGGGTGGTT
CAGGGCGTTGGGGCTCGTCTCCGGTGAGGTTCCCGCGTGGGTGCCCGCGGCAGTCCCGCTATGGGCCTGGGTAATTGGTG
CCATTGGCGCCTTCTTGTTACTGCTGCCGCGAGGCGTACCGATGCGCCCGTTAGGGTGGCCCATGCTGTTGATGCTGGTT
TTATCGCCCAGGCCGATGTTGGAGGAAGGCATGGCCGAAGTCTGGCAACTGGATGTGGGGCAGGGCCTGGCGATCCTGGT
GCGCACTCGGCATCACACGTTGTTGTATGACGCCGGACCGCGTTTCGGTGAACTCGACCAAGGGGAACGGGTGGTGCTGC
CGGCATTGCGCAAACTGGGGGTGAAGGGGCTCGACCTGATGCTGATCAGCCACGCCCACGCCGATCATGCCGGCGGTGCC
CCGGCGGTTGCCAGGGGCTTGCCGGTGAAACAGGTGGTCAGTGGTGAACCGTCAGACTTACCTGCGCAATTGCAGGCCGG
GAGCTGTGAGAGCGGTCGGCAATGGACCTGGGATGAAGTCGATTTCCAGCTCTGGCATTGGCCATTGGCTGGCGACAGCA
ACCAGAACTCCTGTGTCTTGCTGATCGAGGCCAATGGCGAACGGCTGCTGTTGAGTGGCGACATCGACGCCGCCGCCGAG
AGAGCCCTGCTGGCCAGTCCGCTGGCCGTGCCCACCGATTGGCTGCAGGCGCCACACCACGGCAGTCGCAGTTCGTCGTC
CAATGCCCTGCTGGATGCCCTGCAACCCAAAGGGGCGCTGATCTCCCGCGGGCAGGGCAATTCGTTTGGCCATCCCCATC
CCACGGTCATCGCGCGTTATCAAAAACGTGGAATGGCGATCTACGACAGCGTCGAACAGGGTGCCATTCGTCTGCAATTG
GGACGCTTCGAGCCGCCGTGGTCAATGCGCCAGGAGCGGCGTTTCTGGCGCGATCCGCCGCCCTTGAACCCATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.236

95.833

0.616
  comA Ralstonia pseudosolanacearum GMI1000

34.149

100

0.375

Multiple sequence alignment